View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_24 (Length: 366)
Name: NF3913_low_24
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 344
Target Start/End: Original strand, 23786572 - 23786896
Alignment:
| Q |
21 |
aacttgctaaaatgcactctttcgacactatttttaacct-gtcaaagaattaaatgatgaattatccaaatttgatggtcctgtacgtccagatccaga |
119 |
Q |
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| T |
23786572 |
aacttgctaaaatgcactctttcgacactatttttatccttgtcaaagaattagatgatgaattatccaaattcgatggtcctgtacgtccagatccaga |
23786671 |
T |
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| Q |
120 |
cactcatactttcattatcctcatccagtgtcactctctaagaggtaacatgtcttcagctctctattaattcaataaaaccatcgactccggtcattat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
23786672 |
cactcatactttcattatcctcatccagtgtcactctctaagaggtaacatgtcttcagctctctatttattcaataaaatcatcgactccggtcattat |
23786771 |
T |
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| Q |
220 |
cctactgctgaaactttaaatgctctcttagaaggtttttgtcttagaagtcagatagacaaagcaatgttgttttataatgacatcatacttaaaaagg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23786772 |
cctactgctgaaactttaaatgctctcttagaaggtttttgtcttagaagtcagatagacaaagcaatgccgttttataatgacatcatacttaaaaagg |
23786871 |
T |
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| Q |
320 |
gttatcctttggaccatcgtagtta |
344 |
Q |
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| T |
23786872 |
gttatcctttggaccatcgtagtta |
23786896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 322
Target Start/End: Original strand, 47568800 - 47568987
Alignment:
| Q |
135 |
tatcctcatccagtgtcactctctaagaggtaacatgtcttcagctctctattaattcaataaaaccatcgactccggtcattatcctactgctgaaact |
234 |
Q |
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|||||||||||||||||||||| | |||||| |||||||||| | ||| || |||| |||||| ||||||| ||||| || |||||||| | ||||| |
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| T |
47568800 |
tatcctcatccagtgtcactctagacaaggtaaaatgtcttcagatatctctttattccataaaatcatcgacaccggtgataatcctactacacaaact |
47568899 |
T |
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| Q |
235 |
ttaaatgctctcttagaaggtttttgtcttagaagtcagatagacaaagcaatgttgttttataatgacatcatacttaaaaagggtt |
322 |
Q |
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|| ||| ||| |||| |||||||||| ||| | |||| |||||||||||| ||||||| |||||||||||||||||||| |||| |
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| T |
47568900 |
ttgaatcatcttttagttggtttttgtcgcagacgacagactgacaaagcaatgctgttttacaatgacatcatacttaaaaacggtt |
47568987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 163 - 336
Target Start/End: Original strand, 28238753 - 28238926
Alignment:
| Q |
163 |
ggtaacatgtcttcagctctctattaattcaataaaaccatcgactccggtcattatcctactgctgaaactttaaatgctctcttagaaggtttttgtc |
262 |
Q |
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|||||||||||||||||| ||| | ||| |||| | ||||||| |||||||| |||||||||||| ||||| || |||| ||| | ||||||||| |
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| T |
28238753 |
ggtaacatgtcttcagctatctctcttttccataagatcatcgacaccggtcatcatcctactgctggtactttgtattctcttttatatggtttttgtg |
28238852 |
T |
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| Q |
263 |
ttagaagtcagatagacaaagcaatgttgttttataatgacatcatacttaaaaagggttatcctttggaccat |
336 |
Q |
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|||| |||||| |||| |||||| ||||| ||| ||||||||||||||||||||| || ||||||||| |
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| T |
28238853 |
atagacatcagattcacaaggcaatgcacttttacaattacatcatacttaaaaagggttttcagttggaccat |
28238926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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