View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_28 (Length: 347)
Name: NF3913_low_28
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 142 - 337
Target Start/End: Complemental strand, 18306544 - 18306349
Alignment:
| Q |
142 |
tttaaataattaataaaaagaaatagcggtataattctgaaatttgtggaaaacatgcggtaaaaaaggaatttgttgaaagaaattcacatttcttcca |
241 |
Q |
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| T |
18306544 |
tttaaataattaataaaaagaaaaagcggtataattccaaaatttgtggaaaacatgcggtaaaaaaggaatttgttgaaagaaattcacatttcttcca |
18306445 |
T |
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| Q |
242 |
caactttaaaattctcataaaacctatcatatctccatcatcttcaaagacaaatttttaatttaacataaacctttcacataccattaacctttg |
337 |
Q |
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| T |
18306444 |
caactttaaaattctcataaaacctatcatatctccatcatcttcaaagacaaattcttaatcaaacataaaccattcaaataccattaacctttg |
18306349 |
T |
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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 32100421 - 32100486
Alignment:
| Q |
101 |
ttgtttctctttgtcataaagtggagctatatttaaaacattttaaataattaataaaaagaaata |
166 |
Q |
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| T |
32100421 |
ttgtttctctttcttataacatggagctatatttaaaacattttaaataattaataaaaaggaata |
32100486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 31754820 - 31754878
Alignment:
| Q |
101 |
ttgtttctctttgtcataaagtggagctatatttaaaacattttaaataattaataaaa |
159 |
Q |
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| T |
31754820 |
ttgtttctctttcttataaagtggaggtatttttaaaacattttaaataattaataaaa |
31754878 |
T |
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