View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_low_30 (Length: 319)

Name: NF3913_low_30
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_low_30
NF3913_low_30
[»] chr8 (1 HSPs)
chr8 (18-308)||(11401484-11401774)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 11401774 - 11401484
Alignment:
Q  18 ttatataggctagctttccttacataatgaataaacctaatcactaagatataatgaagagacggttcagatattttaataaagatagtcttgcatgtaa 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||    
T  11401774 ttatataggctaggtttccttacataatgaataaacctaatcactaagatataatgaagaggcgtttcagataatttaataaagatagtcttgcatgtaa 11401675  T
Q  118 gcaagatacatgcttgatggctaagtttcttacaagtaaagataaaacaaacggtgctccttatcttcaagtggtccagtagtatcatcatttcttaatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11401674 gcaagatacatgcttgatggctaagtttcttacaagtaaagataaaacaaacggtgctccttatcttcaagtggtccagtagtatcatcatttcttaatg 11401575  T
Q  218 gtgaagacttgtcttctagaatgcttctaaaatcttctagtttatgcttgatttaattttcttacagttgtcatttgtcattgttgatatt 308  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  11401574 gtgaagacttgtcttctggaatgcttctaaaatcttctagtttatgcttgatttaattttcttacggttgtcatttgtcattgtttatatt 11401484  T

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