View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3913_low_31 (Length: 318)
Name: NF3913_low_31
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 14771532 - 14771218
Alignment:
| Q |
1 |
aacattaaaaatataaaatgtcataaatgatccttcttcacatnnnnnnnnnntaa---ttataatcataaacggtcttgctctcataaaaaagaacaac |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14771532 |
aacattaaaaatataaaatgtcataaatgatccttcttcacataaaaaaaataaaaatattataatcataaactgtcttgctctcataaaaaagaacaac |
14771433 |
T |
|
| Q |
98 |
tataaaattcacataatgaacaaataaaactgtgactccagtcaacaatattaattcttctttgtagcttttctttgatcctttctttgtgaagtagttg |
197 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14771432 |
tataaaattcagataatgagcaaataaaactgtgactccagtcaacaatattaattcttctttgtagcttttctttgaacctttctttgtgaagtagttg |
14771333 |
T |
|
| Q |
198 |
aaatatcttact-----tgcaatttcaacacaattgagttattagtttagtgcgtctatttctctccaattaatgaatgaaacagcaacnnnnnnncaag |
292 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
14771332 |
aaatatcttacttgacctgcaatttcaacacaattgagttattagtttagtgcgtctttttctctacaattaatgaatgaaacagcaac-aaaaaacaag |
14771234 |
T |
|
| Q |
293 |
tatcatctagcctatg |
308 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14771233 |
tatcatctagcctatg |
14771218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47648419 - 47648456
Alignment:
| Q |
1 |
aacattaaaaatataaaatgtcataaatgatccttctt |
38 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
47648419 |
aacattaaaaatataaaatgccataaattatccttctt |
47648456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 47648566 - 47648614
Alignment:
| Q |
151 |
attcttctttgtagcttttctttgatcctttctttgtgaagtagttgaa |
199 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
47648566 |
attcttttttgtagcttttgtttgaatctttctttgtgaagcagttgaa |
47648614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University