View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_32 (Length: 304)
Name: NF3913_low_32
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 43015010 - 43015294
Alignment:
| Q |
1 |
aacaggaacacgaaagaggagaaagattcaaaccgaagagtgtgacttacaaggaagtacaggaggagaaacaagatggcacaaaactggtaagaccaga |
100 |
Q |
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| T |
43015010 |
aacaggaacacgaaagaggagaaagattcaaaccgaagagtgtgacttacaaggaagtacaggaggagaaacaagatggcacaaaactggtaagaccaga |
43015109 |
T |
|
| Q |
101 |
cctgttatggttaatggtaaacaaaaaggttgcaagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaagacgaattgggtga |
200 |
Q |
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| T |
43015110 |
cctgttatggttaatggtaaacaaaaaggttgcaagaaaattcttgttctctacaccaacttcggaaagaatcgaaaacccgagaagacgaattgggtga |
43015209 |
T |
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| Q |
201 |
tgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaagatattttatcagacacagccaag |
285 |
Q |
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| T |
43015210 |
tgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaagatattttatcagacacagccaag |
43015294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 263
Target Start/End: Complemental strand, 28948919 - 28948724
Alignment:
| Q |
68 |
gaaacaagatggcacaaaactggtaagaccagacctgttatggttaatggtaaacaaaaaggttgcaagaaaattcttgttctctacaccaactttggaa |
167 |
Q |
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| T |
28948919 |
gaaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaa |
28948820 |
T |
|
| Q |
168 |
agaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaaga |
263 |
Q |
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| T |
28948819 |
ggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
28948724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 282
Target Start/End: Original strand, 4235754 - 4235887
Alignment:
| Q |
149 |
ctctacaccaact-ttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagag |
247 |
Q |
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| T |
4235754 |
ctctacaccaactattgcaaaga-tggaaaaccagagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaa |
4235852 |
T |
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| Q |
248 |
cttgttgtttcaaagatattttatcagacacagcc |
282 |
Q |
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| T |
4235853 |
ttcgttgcttcaaagatcttctaccagacacagcc |
4235887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 38887028 - 38887137
Alignment:
| Q |
134 |
aagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaag |
233 |
Q |
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| T |
38887028 |
aagaaaattcttgtgctttacactaactacagaaagcaaagaaagccagagaaaacaaattgggttatgcaccaataccatcttggaaacaatgaagagg |
38887127 |
T |
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| Q |
234 |
agaaagaagg |
243 |
Q |
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| T |
38887128 |
agaaagaagg |
38887137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 30505860 - 30505981
Alignment:
| Q |
124 |
aaaaggttgcaagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaa |
223 |
Q |
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|||||||| ||| ||||||||||| || ||||| |||| |||||| | |||| || ||||| || ||||||||||||||||| || |||||||| |
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| T |
30505860 |
aaaaggttacaaaaaaattcttgtactttacacaaactatggaaaacaaagaaagccagagaaaacaaattgggtgatgcatcagtatcatcttgggagt |
30505959 |
T |
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| Q |
224 |
catgaagaagagaaagaaggag |
245 |
Q |
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| T |
30505960 |
gatgaagaagagaaagaaggag |
30505981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 34830007 - 34829853
Alignment:
| Q |
125 |
aaaggttgcaagaaaattcttgttctctacaccaactttggaaagaatcgaaaacccgagaagacgaattgggtgatgcatcaataccatcttggacaac |
224 |
Q |
| |
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||||||| |||||| || || || ||||||||||||| ||||| | | || || |||||||| ||||||||||||||||||||||| ||||| |
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| T |
34830007 |
aaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagta |
34829908 |
T |
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| Q |
225 |
atgaagaagagaaagaaggagagcttgttgtttcaaagatattttatcagacaca |
279 |
Q |
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|||||||||||||||| || || | |||||||||||| | ||||| || ||||| |
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| T |
34829907 |
atgaagaagagaaagatggtgaattagttgtttcaaaggtgttttaccaaacaca |
34829853 |
T |
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