View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_33 (Length: 303)
Name: NF3913_low_33
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 30784014 - 30783734
Alignment:
| Q |
4 |
cgaaagaaaggaaaagacatggaaagcgagttcttcggggggaaaattctgaattcatcattactgaaacggaatctaaatgtctagggaaaccctgtaa |
103 |
Q |
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| T |
30784014 |
cgaaagaaaggaaaagacatggaaagcgagttcttcggggggaaaattctgaattcatcattactgaaacggaatctaaatgtctagggaaaccctgtaa |
30783915 |
T |
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| Q |
104 |
atcctgatcttaatagaattagtaactaccaagttttattcattctcattccaagaaccggaaatttgatcaaattaggaatgccatattcggactatgt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30783914 |
atcctgatcttaatagaattagtaactaccaagttttattcattctcattccaagaaccggaaatttgatcaaattaggaatgccatattcggactatgt |
30783815 |
T |
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| Q |
204 |
tagttatgtaactatatcaacaacactcgttaaaataatttgtgattgttctgttataaacaaaacgtggatgcttattgc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30783814 |
tagttatgtaactatatcaacaacactcgttaaaataatttgtgattgttctgttataaacaaaacgtggatgcttattgc |
30783734 |
T |
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