View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3913_low_4 (Length: 607)
Name: NF3913_low_4
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Original strand, 45068489 - 45069068
Alignment:
| Q |
18 |
agtatacgtcaaacaaatatcgacaatgtcttcgacggtgtagcccaatgataagggttaggaaaccgaaggagttctatgtagcaagttcagagttcga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45068489 |
agtatacgtcaaacaaatatcgacaatgtctttgacggtgtagcccaatgataagggttaggaaaccgaaggagttctatgtagcaagttcagagttcga |
45068588 |
T |
|
| Q |
118 |
tccctgcgacaaacatttctccctcctcttaactaattaatcactaacatttgcctatnnnnnnngaatatcaacaattaatgttaaaagaaattgtatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45068589 |
tccctgcgacaaacatttctccctccccttaactaattaatcactaacatttgcctataaaaaaagaatatcaacaattaatgttaaaagaaattgtatt |
45068688 |
T |
|
| Q |
218 |
tggtcaatactcaatgacaagttctgttttgatgagtgatgagttcgtgctacttgtaggccaatgttttgtctcttgttctaagtggagaatcatcacc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45068689 |
tggtcaatactcaatgacaagttctgttttgatgagtgatgagttcgtgctacttgtaggccaatgttttgtctcttgttctaagtggagaatcatcacc |
45068788 |
T |
|
| Q |
318 |
atgaatgaggccaaaaccaattgcattgattgttcaaatcaatgcactggaagggaaaggggttactgtgtgtgtgaagtgcccttatcggcaatacctt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45068789 |
atgaatgaggccaaaaccaattgcattgattgttcaaatcaatgcactggaagggaaaggggttactgtgagtgtgaagtgcccttatcggcaatacctt |
45068888 |
T |
|
| Q |
418 |
agttcaaggaaggaatattgattttctgcttctcaatgtgacttctctttttcttacataatcatttaagtggcccctttcttttctctttattacttgc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45068889 |
agttcaaggaaggaatattgattttctgcttctcaatgtgacttctctttttcttacataatcatttaagtggcccctttcttttctctttattacttgc |
45068988 |
T |
|
| Q |
518 |
aatttaagccacaaatacggttgctaaagcattcaagggctaattattaattatcagtagcttatttaccacaggttctg |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45068989 |
aatttaagccacaaatacggttgctaaagcattcaagggctaattattaattatcagtagcttatttaccacatgttctg |
45069068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University