View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_41 (Length: 253)
Name: NF3913_low_41
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_41 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 93165 - 93417
Alignment:
| Q |
1 |
tgaggaggaacacagaaaacgaaatgaagaagagaaattttgcttgggaggaaagcaatctccgccaaagtccgttggagaataatgcgtccctaaatct |
100 |
Q |
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| T |
93165 |
tgaggagttacacatacaacgaaatgaagaagagaaattttgcttgggaggaaagcaatctccgccaaagtccgttggagaataatgcgtccctaaatct |
93264 |
T |
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| Q |
101 |
tagcatgcaatgttgattgatatttatatgcagagataaactcaaatgtggggcaactactcatttctataaatggtaaaacacggaaaccacacagtat |
200 |
Q |
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| T |
93265 |
tagcatgcaatgttgattgatatttatatgcagagatgaactcaaatgtggggcaactactcatttctataaatggtaaaacacggaaaccacacagtat |
93364 |
T |
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| Q |
201 |
atatggcataattgtttgttactaaaatatgttacttaactaattaaaatgtt |
253 |
Q |
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| T |
93365 |
atatggcataattgtttgttactaaaatatgttacttaactaattaaaatgtt |
93417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 37156254 - 37156486
Alignment:
| Q |
21 |
gaaatgaagaagagaaattttgcttgggaggaaagcaatctccgccaaagtccgttggagaataatgcgtccctaaatcttagcatgcaatgttgattga |
120 |
Q |
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| T |
37156254 |
gaaatgaagaagagaaattttgcttgggacgaaagcaatctccgccaaagtccgttggagaagaatgcgtccctacatcttagcatgcaatgttgattga |
37156353 |
T |
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| Q |
121 |
tatttatatgcagagataaactcaaatgtggggcaactactcatttctataaatggtaaaacacggaaaccacacagtatatatggcataattgtttgtt |
220 |
Q |
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| T |
37156354 |
tatttatatgcaaagatgaattcaaatgtggtacaactactcatttctataaatggtaaaacacggaaaccacacagtatatatggcataattgtttgtt |
37156453 |
T |
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| Q |
221 |
actaaaatatgttacttaactaattaaaatgtt |
253 |
Q |
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| T |
37156454 |
actaaaatatgtttcttaactaattaaaatgtt |
37156486 |
T |
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