View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_low_42 (Length: 244)

Name: NF3913_low_42
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_low_42
NF3913_low_42
[»] chr7 (3 HSPs)
chr7 (11-232)||(12316072-12316293)
chr7 (11-232)||(18566677-18566897)
chr7 (11-231)||(1724493-1724709)
[»] chr2 (3 HSPs)
chr2 (11-232)||(24072707-24072931)
chr2 (123-232)||(44482424-44482535)
chr2 (11-86)||(24078397-24078472)
[»] chr4 (2 HSPs)
chr4 (16-232)||(18809927-18810141)
chr4 (11-231)||(13758193-13758408)
[»] chr5 (1 HSPs)
chr5 (11-232)||(19834591-19834816)
[»] scaffold0164 (1 HSPs)
scaffold0164 (119-232)||(17167-17282)
[»] chr6 (1 HSPs)
chr6 (11-176)||(893066-893232)
[»] chr3 (1 HSPs)
chr3 (11-231)||(54077864-54078080)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 12316072 - 12316293
Alignment:
Q  11 cacagacgccttaatctcaacttgaaaggaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacnnnnn 110  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  12316072 cacaaacgccttaatctcaacttgaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacaaaaa 12316171  T
Q  111 nnnnnnnngaacaatcatcaaacatagaaaatatatagag--aagtcatgagtgaagatcaatagtcattgtcattaaaatggtacaatgcttgattaac 208  Q
            ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12316172 aaaaaa--gaacaatcatcaaacatagaaaatatatagagagaagtcatgagtgaagatgaatagtcattgtcattaaaatggtacaatgcttgattaac 12316269  T
Q  209 cgccgtctcttaggtgaaagatga 232  Q
    | ||||||| ||||||||||||||    
T  12316270 caccgtctcctaggtgaaagatga 12316293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 18566897 - 18566677
Alignment:
Q  11 cacagacgccttaatctcaacttgaaaggaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacnnnnn 110  Q
    |||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||          
T  18566897 cacaaacgccttgatctcaacttgaaaagaaagaaagatattttcattaccatggaattgctgaatacccataaaaccaaattaaaaatgtcaa---aaa 18566801  T
Q  111 nnnnnnnngaacaatcatcaaacatagaaaatatata--gagaagtcatgagtgaagatcaatagtcattgtcattaaaatggtacaatgcttgattaac 208  Q
            |||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  18566800 aaaaaaaagaacaatcatcaaacatagaaaatatataaagagaagtcatgagtgaagatgaatagtcattgtcattaaaatggtacaatgcttgattagc 18566701  T
Q  209 cgccgtctcttaggtgaaagatga 232  Q
    | ||||||| ||||||||||||||    
T  18566700 caccgtctcctaggtgaaagatga 18566677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 1724493 - 1724709
Alignment:
Q  11 cacagacgccttaatctcaacttgaaaggaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacnnnnn 110  Q
    |||| ||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||            
T  1724493 cacaaacgccttgatttcaacttaaaaggaaagaaagatatatccattaccatggaattgttgaaaacacataaaaccaaa-taaaaatgtc-----gga 1724586  T
Q  111 nnnnnnnngaacaatcatcaaacat--agaaaatatatagagaagtcatgagtgaagatcaatagtcattgtcattaaaatggtacaatgcttgattaac 208  Q
             ||||||||||||||||  |||| ||||| |||||||||||||||||| || |||| |||||||||  |||||||| ||| ||| || ||||    
T  1724587 aaaaaaaaaaacaatcatcaaacatagagaagatatagagagaagtcatgagtgaatatgaatattcattgtcacaaaaatggtgcaacgctcgaataac 1724686  T
Q  209 cgccgtctcttaggtgaaagatg 231  Q
    | ||||||| |||||||||||||    
T  1724687 caccgtctcctaggtgaaagatg 1724709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 24072931 - 24072707
Alignment:
Q  11 cacagacgccttaatctcaacttgaaaggaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacnnnnn 110  Q
    |||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  24072931 cacaaacgccttgatcttaacttgaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacaaaaa 24072832  T
Q  111 nnnnnnnn-gaacaatcatcaaacatagaaaatatatagaga--agtcatgagtgaagatcaatagtcattgtcattaaaatggtacaatgcttgattaa 207  Q
             |||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  24072831 aaaaaaaaagaacaatcatcaaacatagaaaatatatagagagaagtcatgagtgaagatgaatggtcattgtcattaaaatggtacaatgcttgattaa 24072732  T
Q  208 ccgccgtctcttaggtgaaagatga 232  Q
    || ||||||| ||||||||||||||    
T  24072731 ccaccgtctcctaggtgaaagatga 24072707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 44482424 - 44482535
Alignment:
Q  123 aatcatcaaacatagaaaatatatagag--aagtcatgagtgaagatcaatagtcattgtcattaaaatggtacaatgcttgattaaccgccgtctctta 220  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||    
T  44482424 aatcatcaaaaatagaaaatatatagagagaagtcatgagtgaagatgaatagtcattgtcattaaaatggtacaatgattgattaaccaccgtctccta 44482523  T
Q  221 ggtgaaagatga 232  Q
    ||||||||||||    
T  44482524 ggtgaaagatga 44482535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 24078472 - 24078397
Alignment:
Q  11 cacagacgccttaatctcaacttgaaaggaaagaaagatatttccattaccatggaattgttgaatacccataaaa 86  Q
    |||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24078472 cacaaacgccttgatcttaacttgaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaa 24078397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 18810141 - 18809927
Alignment:
Q  16 acgccttaatctcaacttgaaaggaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacnnnnnnnnnn 115  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  18810141 acgccttgatctgaacttgaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacaaaaaaaaaa 18810042  T
Q  116 nnngaacaatcatcaaacatagaaaatatatagaga--agtcatgagtgaagatcaatagtcattgtcattaaaatggtacaatgcttgattaaccgccg 213  Q
        ||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||    
T  18810041 ----aacaatcatcaaacatagaaaatatatagagagaagtcatgagtgaagatgaatagtcattgtcattaatatggtacaatgcttgattaaccaccg 18809946  T
Q  214 tctcttaggtgaaagatga 232  Q
    |||| ||||||||||||||    
T  18809945 tctcctaggtgaaagatga 18809927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 13758193 - 13758408
Alignment:
Q  11 cacagacgccttaatctcaacttgaaaggaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacnnnnn 110  Q
    |||| ||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||            
T  13758193 cacaaacgccttgatttcaacttaaaaggaaagaaagatatatccattaccatggaattgttgaaaacacataaaaccaaa-taaaaatgtc------gg 13758285  T
Q  111 nnnnnnnngaacaatcatcaaacat--agaaaatatatagagaagtcatgagtgaagatcaatagtcattgtcattaaaatggtacaatgcttgattaac 208  Q
             ||||||||||||||||  |||| ||||| |||||||||||||||||| || |||| |||||||||  |||||||| ||| ||| || ||||    
T  13758286 aaaaaaaaaaacaatcatcaaacatagagaagatatagagagaagtcatgagtgaatatgaatattcattgtcacaaaaatggtgcaacgctcgaataac 13758385  T
Q  209 cgccgtctcttaggtgaaagatg 231  Q
    | ||||||| |||||||||||||    
T  13758386 caccgtctcctaggtgaaagatg 13758408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 19834816 - 19834591
Alignment:
Q  11 cacagacgccttaatctcaacttgaaaggaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaac--nnn 108  Q
    |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  19834816 cacaaacgccttgatctcaacttgaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacaaaaa 19834717  T
Q  109 nnnnnnnnnngaacaatcatcaaacatagaaaatatat--agagaagtcatgagtgaagatcaatagtcattgtcattaaaatggtacaatgcttgatta 206  Q
              ||||||||||||||||||||||||||||  ||||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||    
T  19834716 aaaaaaaaaagaacaatcatcaaacatagaaaatatatagagagaagtcatgagtgaagatgagtaatcattgtcattgaaatggtacaatgcttgatta 19834617  T
Q  207 accgccgtctcttaggtgaaagatga 232  Q
    ||| ||||||| ||||||||||||||    
T  19834616 accaccgtctcctaggtgaaagatga 19834591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 17282 - 17167
Alignment:
Q  119 gaacaatcatcaaacatagaaaatatatagaga--agtcatgagtgaagatcaatagtcattgtcattaaaatggtacaatgcttgattaaccgccgtct 216  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  17282 gaacaatcatcaaacatagaaaatatatagagagaagtcatgagtgaagatgaatggtcattgtcattaaaatggtacaatgcttgattaaccaccgtct 17183  T
Q  217 cttaggtgaaagatga 232  Q
    | ||||||||||||||    
T  17182 cctaggtgaaagatga 17167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 893066 - 893232
Alignment:
Q  11 cacagacgccttaatctcaacttgaaaggaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacnnnnn 110  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||          
T  893066 cacaaacgccttgatctcaacttgaaaagaaagaaagatatttccattatcatggaattgttgaatacccataaaactaaattaaaaatgtcaa-aaaaa 893164  T
Q  111 nnnnnnnngaacaatcatcaaacatagaaaat--atatagagaagtcatgagtgaagatcaatagtca 176  Q
            ||||||||||||||||||||||||  ||| |||||||| |||||||||||| ||||||||    
T  893165 aaaaaaaagaacaatcatcaaacatagaaaatacatagagagaagtgatgagtgaagatgaatagtca 893232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 54077864 - 54078080
Alignment:
Q  11 cacagacgccttaatctcaacttgaaaggaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgtcaacnnnnn 110  Q
    |||| ||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||            
T  54077864 cacaaacgccttgatttcaacttaaaaggaaagaaagatatatccattaccatggaattgttgaaaacacataaaaccaaa-taaaaatgtc-----gga 54077957  T
Q  111 nnnnnnnngaacaatcatcaaacat--agaaaatatatagagaagtcatgagtgaagatcaatagtcattgtcattaaaatggtacaatgcttgattaac 208  Q
             ||||||||||||||||  |||| ||||| |||||||||||||||||| || |||| |||||||||  |||||||| ||| ||| || ||||    
T  54077958 aaaaaaaaaaacaatcatcaaacatagagaagatatagagagaagtcatgagtgaatatgaatattcattgtcacaaaaatggtgcaacgctcgaataac 54078057  T
Q  209 cgccgtctcttaggtgaaagatg 231  Q
    | ||||||| |||||||||||||    
T  54078058 caccgtctcctaggtgaaagatg 54078080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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