View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_43 (Length: 239)
Name: NF3913_low_43
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 8979007 - 8979187
Alignment:
| Q |
18 |
gtactataatctgaaaattatgcattattgatcagct--ttatcttcaattcttcaactttagttttacctatccattaatggccattaccattgccgct |
115 |
Q |
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| T |
8979007 |
gtactataatctgaaaattatgcattattaagaacctgtttatctttaattcttcaactttagttttacctatgcattaatggccattaccattgccact |
8979106 |
T |
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| Q |
116 |
caactgttatttaatgtctacatatgatgttgcagacttgattttttcgagaactggtgcaagtgcaatgacttgttatga |
196 |
Q |
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| T |
8979107 |
caactgttatttaatgtctgcatatgatgttgcagacttgattttttcgagaactggtgcaaatgcaatgacttgttatga |
8979187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 8973920 - 8974021
Alignment:
| Q |
55 |
ttatcttcaattcttcaactttagttttacctatccattaatggccattaccattgccgctcaactgttatttaatgtctacatatgatgttgcagactt |
154 |
Q |
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| T |
8973920 |
ttatcttcaactcttcaactttagttttacctttgcattaatggccgctaccattaccactccaccgttttctaatgtctgtatatgatgctgcagactt |
8974019 |
T |
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| Q |
155 |
ga |
156 |
Q |
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|| |
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| T |
8974020 |
ga |
8974021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 8995549 - 8995648
Alignment:
| Q |
57 |
atcttcaattcttcaactttagttttacctatccattaatggccattaccattgccgctcaactgttatttaatgtctacatatgatgttgcagacttga |
156 |
Q |
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| T |
8995549 |
atcttcaattcttcaactttagttttatctatgcattaatggccactaccatcaccactcaaccgttttctaatttcagtatatgatgctgcagacttga |
8995648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 9015963 - 9016062
Alignment:
| Q |
57 |
atcttcaattcttcaactttagttttacctatccattaatggccattaccattgccgctcaactgttatttaatgtctacatatgatgttgcagacttga |
156 |
Q |
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| T |
9015963 |
atctacaattcttcaactttagtcttacctatgcatgaatggccgataccattaccactccaccgttttctaatatctacatatgatgctgcagacttga |
9016062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 9019988 - 9020076
Alignment:
| Q |
68 |
ttcaactttagttttacctatccattaatggccattaccattgccgctcaactgttatttaatgtctacatatgatgttgcagacttga |
156 |
Q |
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| T |
9019988 |
ttcaactttagttttacctttgcattaatggccgctaccattaccactccaccgttttctaatgtctgcatatgatgctgcatacttga |
9020076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 8987747 - 8987789
Alignment:
| Q |
197 |
ttgttagatctagagttattgttgtttctttcatttattatgt |
239 |
Q |
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| T |
8987747 |
ttgttagatcttaagttattgttgtttctttcattcattatgt |
8987789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 8972980 - 8973024
Alignment:
| Q |
152 |
cttgattttttcgagaactggtgcaagtgcaatgacttgttatga |
196 |
Q |
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| T |
8972980 |
cttgattgtttctagaaatggtgcaagtgcagtgacttgttatga |
8973024 |
T |
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