View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_46 (Length: 229)
Name: NF3913_low_46
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 53901968 - 53902135
Alignment:
| Q |
44 |
gctcaattgctgctttattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaacaccttctgtta |
143 |
Q |
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| T |
53901968 |
gctcaattgctgctttattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaacaccttctgtta |
53902067 |
T |
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| Q |
144 |
tccacattgttgctgctacttccttcccctccaccatcaacattcctatactttccaagcttaacagt |
211 |
Q |
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| T |
53902068 |
tccacattgttgctgctacttccttcccctccaccatcaacattcctatactttccaagcttaacagt |
53902135 |
T |
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Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 3958514 - 3958350
Alignment:
| Q |
45 |
ctcaattgctgctttattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaacaccttctgttat |
144 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3958514 |
ctcaactgctgcttcattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaacaccttctgttat |
3958415 |
T |
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| Q |
145 |
ccacattgttgctgctacttccttcccctccaccatcaacattcctatactttccaagcttaaca |
209 |
Q |
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| T |
3958414 |
ccacattgttgctgctacttccttcccctccaccagcaacattcctatactttccaagcttaaca |
3958350 |
T |
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