View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_low_5 (Length: 593)

Name: NF3913_low_5
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_low_5
NF3913_low_5
[»] chr6 (7 HSPs)
chr6 (99-177)||(30953426-30953504)
chr6 (412-569)||(30953711-30953869)
chr6 (342-383)||(30953640-30953681)
chr6 (342-383)||(28583736-28583777)
chr6 (342-383)||(30952702-30952743)
chr6 (1-37)||(30953328-30953364)
chr6 (538-566)||(18591123-18591151)
[»] chr5 (3 HSPs)
chr5 (516-566)||(25453334-25453384)
chr5 (522-564)||(26887135-26887177)
chr5 (514-566)||(42004986-42005039)
[»] chr3 (1 HSPs)
chr3 (516-566)||(2011964-2012014)
[»] chr4 (1 HSPs)
chr4 (517-566)||(20986049-20986098)
[»] chr2 (1 HSPs)
chr2 (538-566)||(7318412-7318440)
[»] chr1 (3 HSPs)
chr1 (538-566)||(11336292-11336320)
chr1 (538-566)||(11494311-11494339)
chr1 (522-566)||(13917281-13917325)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 30953426 - 30953504
Alignment:
Q  99 gtttttagatccaaaatcataaaaattggtgttgttgctgggctctgattctttgagctgcaatttttccatcaaaata 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30953426 gtttttagatccaaaatcataaaaattggtgttgttgctgggctctgattctatgagctgcaatttttccatcaaaata 30953504  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 412 - 569
Target Start/End: Original strand, 30953711 - 30953869
Alignment:
Q  412 tccatgtcaacgccgcataagaggttccgatgagttatgtggtttggggaagttttctaaagaatcttacttttccaagcatcgaatccaa-nnnnnnnn 510  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| | |||||||||             
T  30953711 tccatgtcaaccccgcataagaggttccgatgagttatgtggcttggggaggttttctgaagaatcttacttttccaaggaccgaatccaattttttttt 30953810  T
Q  511 nnncaaggggtaaaaccaaaagtttcatatattataggggataaaacactattaactct 569  Q
       || || ||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  30953811 ttacagggagtaaaaccaaaagtttcatatattacatgggataaaaccctattaactct 30953869  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 30953640 - 30953681
Alignment:
Q  342 aattaaatatgacatggtaaatgaattacacacgtggatgac 383  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  30953640 aattaaatatgacatggtaaatgaattacacatgtggatgac 30953681  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 28583777 - 28583736
Alignment:
Q  342 aattaaatatgacatggtaaatgaattacacacgtggatgac 383  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  28583777 aattaaatatgacgtggtaaatgaattacacacatggatgac 28583736  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 30952743 - 30952702
Alignment:
Q  342 aattaaatatgacatggtaaatgaattacacacgtggatgac 383  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  30952743 aattaaatatgaagtggtaaatgaattacacacgtggatgac 30952702  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30953328 - 30953364
Alignment:
Q  1 atctattggagaagggggaagagcatgtgacaaatct 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30953328 atctattggagaagggggaagagcgtgtgacaaatct 30953364  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 566
Target Start/End: Complemental strand, 18591151 - 18591123
Alignment:
Q  538 tatattataggggataaaacactattaac 566  Q
    |||||||||||||||||||||||||||||    
T  18591151 tatattataggggataaaacactattaac 18591123  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 566
Target Start/End: Complemental strand, 25453384 - 25453334
Alignment:
Q  516 aggggtaaaaccaaaagtttcatatattataggggataaaacactattaac 566  Q
    ||||||||||||||||||  ||| ||||| |||| ||||||||||||||||    
T  25453384 aggggtaaaaccaaaagtgacatgtattacagggaataaaacactattaac 25453334  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 564
Target Start/End: Complemental strand, 26887177 - 26887135
Alignment:
Q  522 aaaaccaaaagtttcatatattataggggataaaacactatta 564  Q
    |||| |||||||  |||||||||||||||||||||||||||||    
T  26887177 aaaatcaaaagtgacatatattataggggataaaacactatta 26887135  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 42004986 - 42005039
Alignment:
Q  514 caaggggtaaaaccaaaagtttcatatattat-aggggataaaacactattaac 566  Q
    ||||||| |||||||||||| ||||||||||| | ||| |||||||||||||||    
T  42004986 caaggggcaaaaccaaaagtgtcatatattataaaggggtaaaacactattaac 42005039  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 566
Target Start/End: Original strand, 2011964 - 2012014
Alignment:
Q  516 aggggtaaaaccaaaagtttcatatattataggggataaaacactattaac 566  Q
    ||||| |||||||||| |  |||||||||||||||||||||| ||||||||    
T  2011964 agggggaaaaccaaaaatgccatatattataggggataaaactctattaac 2012014  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Original strand, 20986049 - 20986098
Alignment:
Q  517 ggggtaaaaccaaaagtttcatatattataggggataaaacactattaac 566  Q
    |||| ||||| ||| || |||||||||||||||| |||||||||||||||    
T  20986049 ggggcaaaacaaaaggtgtcatatattatagggggtaaaacactattaac 20986098  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 566
Target Start/End: Original strand, 7318412 - 7318440
Alignment:
Q  538 tatattataggggataaaacactattaac 566  Q
    |||||||||||||||||||||||||||||    
T  7318412 tatattataggggataaaacactattaac 7318440  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 566
Target Start/End: Complemental strand, 11336320 - 11336292
Alignment:
Q  538 tatattataggggataaaacactattaac 566  Q
    |||||||||||||||||||||||||||||    
T  11336320 tatattataggggataaaacactattaac 11336292  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 566
Target Start/End: Complemental strand, 11494339 - 11494311
Alignment:
Q  538 tatattataggggataaaacactattaac 566  Q
    |||||||||||||||||||||||||||||    
T  11494339 tatattataggggataaaacactattaac 11494311  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 566
Target Start/End: Original strand, 13917281 - 13917325
Alignment:
Q  522 aaaaccaaaagtttcatatattataggggataaaacactattaac 566  Q
    |||||||||||| || ||||||| |||||||||||| ||||||||    
T  13917281 aaaaccaaaagtgtcctatattacaggggataaaactctattaac 13917325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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