View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_low_6 (Length: 575)

Name: NF3913_low_6
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_low_6
NF3913_low_6
[»] chr3 (4 HSPs)
chr3 (229-439)||(6078915-6079126)
chr3 (3-164)||(6079191-6079352)
chr3 (277-415)||(11028878-11029016)
chr3 (14-91)||(11028675-11028752)
[»] chr6 (5 HSPs)
chr6 (231-369)||(13549165-13549307)
chr6 (3-100)||(19215354-19215449)
chr6 (296-439)||(7457785-7457928)
chr6 (240-439)||(31876072-31876270)
chr6 (3-70)||(13548896-13548963)
[»] scaffold0017 (3 HSPs)
scaffold0017 (240-439)||(39421-39611)
scaffold0017 (12-95)||(39144-39228)
scaffold0017 (125-164)||(39286-39325)
[»] chr8 (1 HSPs)
chr8 (239-349)||(21350191-21350301)
[»] chr1 (1 HSPs)
chr1 (12-73)||(19190469-19190530)
[»] chr2 (1 HSPs)
chr2 (12-95)||(13652915-13652999)
[»] chr4 (1 HSPs)
chr4 (240-355)||(51030972-51031086)
[»] chr7 (1 HSPs)
chr7 (239-355)||(26645270-26645384)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 5e-79; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 229 - 439
Target Start/End: Complemental strand, 6079126 - 6078915
Alignment:
Q  229 tgtaaacaaacctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatg--aggatttgcatttgggccagggtgaaagg 326  Q
    ||||||||| ||||||||||||||||||||||||||| |   |||||||||||||||||||||| ||||  ||||||||||||| |||||||||||||||    
T  6079126 tgtaaacaaccctctctctctccaaaaaccttatgcctccaaccttcatcattttgtgcaagtgctatgtgaggatttgcatttaggccagggtgaaagg 6079027  T
Q  327 gttacctcaatggctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtctttcatctcacattgaaccgatgttgatcgaaaa 426  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  6079026 gttacctcgatggctccctattttccttaaatattagtttgtcccttctctttctctac-cttgtctttcatctcacattgaaccgatgttgatagaaaa 6078928  T
Q  427 caaatagtaaatg 439  Q
    |||||||||||||    
T  6078927 caaatagtaaatg 6078915  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 6079352 - 6079191
Alignment:
Q  3 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaagnn 102  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||      
T  6079352 tgggtaaagtatacttgagtaacacaaagtaaatatcaaataagtccagaggtacaaaacataaaaaattgtgtctttatttataggtatataggaagaa 6079253  T
Q  103 nnnnnnnccaaattattttctttgttcatcatctctatttacatcagactttcattttctac 164  Q
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6079252 aaaaaaaccaaattattttctttgttcatcatctctatttacatcacactttcattttctac 6079191  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 277 - 415
Target Start/End: Original strand, 11028878 - 11029016
Alignment:
Q  277 tcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatggctccctatttttcttaaatattagtttgtcctttctc 376  Q
    ||||| ||||| |||| ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||| | ||||| ||||||| ||||  || ||    
T  11028878 tcattatgtgcgagtgctatgaggatttgcatttaggccacggtgaaagggttacctcgatgactccctattctccttaattattagtgtgtctcttgtc 11028977  T
Q  377 tttctctactcttgtctttcatctcacattgaaccgatg 415  Q
    || ||||||||||||||| ||||||||||||||||||||    
T  11028978 ttcctctactcttgtcttccatctcacattgaaccgatg 11029016  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 11028675 - 11028752
Alignment:
Q  14 tacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggta 91  Q
    |||||||||||||||||| ||||||||||||||||  | |||||||| |||||||||||| |||||||||||||||||    
T  11028675 tacttgagtaacacaaagcaaatatcaaataagtcgagtggtacaaagcacaaaaaattgggtctttatttataggta 11028752  T

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Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 231 - 369
Target Start/End: Original strand, 13549165 - 13549307
Alignment:
Q  231 taaacaaacctctctctctccaaaaaccttatgccccatt-ccttcatcattttgtgcaagt---gttatgaggatttgcatttgggccagggtgaaagg 326  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||   ||| ||||||||| ||||| ||||| ||| |||||    
T  13549165 taaacaaacctctctctctccaaaaaccttatgccccctttccttcatcatttcgtgcgagtcatgttgtgaggatttacatttaggccacggtcaaagg 13549264  T
Q  327 gttacctcaatggctccctatttttcttaaatattagtttgtc 369  Q
    || ||||| ||||||||||||||| |||| |||||| ||||||    
T  13549265 gtgacctcgatggctccctattttccttagatattattttgtc 13549307  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 19215354 - 19215449
Alignment:
Q  3 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaag 100  Q
    |||||| | ||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19215354 tgggtaaagtatacttgagtaacacaaagtaaatatcatataagtccagaggtac-aaacac-aaaaattgtgtctttatttataggtatataggaag 19215449  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 296 - 439
Target Start/End: Original strand, 7457785 - 7457928
Alignment:
Q  296 tgaggatttgcatttgggccagggtgaaagggttacctcaatggctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtcttt 395  Q
    |||| |||||||||| | |||  || ||||||| ||||  ||||||||||||||| |||| |||||| ||| ||  | | |||||| |||||||||| |     
T  7457785 tgagcatttgcatttagtccactgtcaaagggtgacctagatggctccctattttccttacatattattttatctctcccctttctatactcttgtcctc 7457884  T
Q  396 catctcacattgaaccgatgttgatcgaaaacaaatagtaaatg 439  Q
     |||||||||||||| ||  ||||||||||| ||||||||||||    
T  7457885 tatctcacattgaacagagtttgatcgaaaataaatagtaaatg 7457928  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 240 - 439
Target Start/End: Complemental strand, 31876270 - 31876072
Alignment:
Q  240 ctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatgg 339  Q
    ||||||||||||||||| |||||||||| |||||  |||||||||||  |||||| |||| |||||||||| | ||   |  ||| |||  |||  ||||    
T  31876270 ctctctctctccaaaaatcttatgcccc-ttcctctatcattttgtgtgagtgttgtgagcatttgcatttagacccctgccaaatggtggcctagatgg 31876172  T
Q  340 ctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtctttcatctcacattgaaccgatgttgatcgaaaacaaatagtaaatg 439  Q
    ||||||||||| |||| |||||| ||| ||  | | ||| || |||||||||| |  |||||||||||||| ||  ||||||||| | ||||||||||||    
T  31876171 ctccctattttccttacatattattttatctctccccttcctatactcttgtcctctatctcacattgaacagagtttgatcgaatataaatagtaaatg 31876072  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 13548896 - 13548963
Alignment:
Q  3 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaa 70  Q
    |||||| | ||||||||||||||||||||  ||||| |||||||| | ||||||||||| ||||||||    
T  13548896 tgggtaaagtatacttgagtaacacaaagccaatattaaataagtacagaggtacaaaatacaaaaaa 13548963  T

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Target: scaffold0017 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 240 - 439
Target Start/End: Original strand, 39421 - 39611
Alignment:
Q  240 ctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatgg 339  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||    |||      ||||| |||||| ||||| ||| ||||||| ||||  ||||    
T  39421 ctctctctctccaaaaaccttatgccctcttccttcatcatttcgtc---gtg------ggattcgcatttaggccatggtcaaagggtgacctagatgg 39511  T
Q  340 ctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtctttcatctcacattgaaccgatgttgatcgaaaacaaatagtaaatg 439  Q
     ||||||||||||||| |||||| ||||||  ||||||| ||||||| ||||| | |||||||||||||| ||  | |||||||||||||||||||||||    
T  39512 ttccctatttttcttagatattattttgtctattctcttcctctacttttgtcctccatctcacattgaatcggagctgatcgaaaacaaatagtaaatg 39611  T

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Target: scaffold0017; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 39144 - 39228
Alignment:
Q  12 tatacttgagtaacacaaagtaaatatcaaataagtccg-gaggtacaaaacacaaaaaattgtgtctttatttataggtatata 95  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||| || ||||||||||||| |||||||    
T  39144 tatacttgagtaacacaaagcaaatatctaataagtccaagaggtacaaaacacaaaaaaatgggtctttatttataagtatata 39228  T

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Target: scaffold0017; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 39286 - 39325
Alignment:
Q  125 tgttcatcatctctatttacatcagactttcattttctac 164  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  39286 tgttcatcatctctatttacatcacactttcaatttctac 39325  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 349
Target Start/End: Original strand, 21350191 - 21350301
Alignment:
Q  239 cctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatg 338  Q
    |||| ||| |||||||||||||||||||| |||||  |||||||||||| |||| ||||| ||||||||||| ||| |  || ||||||| ||||| |||    
T  21350191 cctccctccctccaaaaaccttatgcccccttcctctatcattttgtgcgagtgctatgaagatttgcatttaggctatagtcaaagggtgacctcgatg 21350290  T
Q  339 gctccctattt 349  Q
    || ||||||||    
T  21350291 gcaccctattt 21350301  T

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Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 19190530 - 19190469
Alignment:
Q  12 tatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattg 73  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  19190530 tatacttgagtaacacaaagcaaatatcaaataagtccagatgtacaaagcacaaaaaattg 19190469  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 13652915 - 13652999
Alignment:
Q  12 tatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacac-aaaaaattgtgtctttatttataggtatata 95  Q
    |||||||||||||||||||| ||||||||||||||||   ||||||||  ||| ||||||||| |||||||||||||| ||||||    
T  13652915 tatacttgagtaacacaaagcaaatatcaaataagtcgaaaggtacaatgcacaaaaaaattgggtctttatttatagttatata 13652999  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 355
Target Start/End: Original strand, 51030972 - 51031086
Alignment:
Q  240 ctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatgg 339  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||||||  |||| | ||||||||||||||| |||||  |  ||||||| || |  ||||    
T  51030972 ctctctctctccaaaaacctaatgcccc-ttcctccgtcattttgtgtgagtgatgtgaggatttgcatttaggccactgccaaagggtgacatagatgg 51031070  T
Q  340 ctccctatttttctta 355  Q
    ||||||||||| ||||    
T  51031071 ctccctattttcctta 51031086  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 26645384 - 26645270
Alignment:
Q  239 cctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatg 338  Q
    ||||||||||||||||||||| ||||||| ||||| | ||||||||||  |||| | ||||||||| ||||| |||||  |  ||||||| ||||  |||    
T  26645384 cctctctctctccaaaaacctaatgcccc-ttcctccgtcattttgtgtgagtgctgtgaggattt-catttaggccactgccaaagggtgacctagatg 26645287  T
Q  339 gctccctatttttctta 355  Q
    |||||||||||| ||||    
T  26645286 gctccctattttcctta 26645270  T

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