View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_8 (Length: 553)
Name: NF3913_low_8
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 23 - 540
Target Start/End: Complemental strand, 28576428 - 28575911
Alignment:
| Q |
23 |
gtgtattgacgaaattcataaaatccaacgacaattcatatggggtgacaacgagaacaacaggagataccatgctgttagttgggaaacggtgtcaaaa |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||| |
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| T |
28576428 |
gtgtattgacgaaattcataaaatccaacgacaattcatatggggtgacaacgagaacaacaagagatatcatgttgttagttgggaaacagtgtcaaaa |
28576329 |
T |
|
| Q |
123 |
ccaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaaatgggttggagtatatattatggatcaacttctc |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
28576328 |
ccaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaactgggttggagtatatattctggatcaacttctc |
28576229 |
T |
|
| Q |
223 |
tttgggctgaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28576228 |
tttgggctgaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagt |
28576129 |
T |
|
| Q |
323 |
aaagttatggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggctttgt |
422 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
28576128 |
aaagttatggcctgcattagagcgaaatattttttggtcgataggcgatggtaaaagtgttggagcctggattcaaatgtggattgaggagaggctttgt |
28576029 |
T |
|
| Q |
423 |
gtgtccgagttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatc |
522 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28576028 |
gtgtccgagttagaaattgatattccgcaacagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatc |
28575929 |
T |
|
| Q |
523 |
aatggttgccttatgatg |
540 |
Q |
| |
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|||||||||||||||||| |
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| T |
28575928 |
aatggttgccttatgatg |
28575911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 24 - 540
Target Start/End: Original strand, 16236017 - 16236533
Alignment:
| Q |
24 |
tgtattgacgaaattcataaaatccaacgacaattcatatggggtgacaacgagaacaacaggagataccatgctgttagttgggaaacggtgtcaaaac |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| |
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| T |
16236017 |
tgtattgacgaaattcataaaatccaacgacaattcatatcgggtgacaacgagaacaacaagagatatcatgctgttagttgggaaacagtgtcaaaac |
16236116 |
T |
|
| Q |
124 |
caaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaaatgggttggagtatatattatggatcaacttctct |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
16236117 |
caaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataaggcgtgcataatgaaactgggttggagtatatattctggatcaacttctct |
16236216 |
T |
|
| Q |
224 |
ttgggctgaggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagta |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16236217 |
ttgggctgaggttatgaggggtaaatatcagcgaagtgatattcttgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagta |
16236316 |
T |
|
| Q |
324 |
aagttatggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggctttgtg |
423 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
16236317 |
aagttatggcctgcattagagcgaaatattttttggtcgataggcgatggtaaaagtgttggagcctggagtcaaatgtggattgaggagaggctttgtg |
16236416 |
T |
|
| Q |
424 |
tgtccgagttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatca |
523 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16236417 |
tgtccgagttagaaattgatattccgcaacagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatca |
16236516 |
T |
|
| Q |
524 |
atggttgccttatgatg |
540 |
Q |
| |
|
||||||||||||||||| |
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| T |
16236517 |
atggttgccttatgatg |
16236533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 75 - 540
Target Start/End: Complemental strand, 32715284 - 32714819
Alignment:
| Q |
75 |
gagaacaacaggagataccatgctgttagttgggaaacggtgtcaaaaccaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataagg |
174 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32715284 |
gagaacaacaagagatatcatgctgttagttgggaaacagtgtcaaaaccaaaagtctttggtggtctaggcttaaggagactcaacgtaatgaataagg |
32715185 |
T |
|
| Q |
175 |
cgtgcataatgaaaatgggttggagtatatattatggatcaacttctctttgggctgaggttatgaggggtaaatatcagcgaagtgatattcctgctga |
274 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32715184 |
cgtgcataatgaaactgggttggagtatatattctggatcaacttctctttgggctgaggttatgaggggtaaatatcagcgaagtgatattcctgctga |
32715085 |
T |
|
| Q |
275 |
gttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttatggcctgcgttagagcgaaatattttttggtcgataggcgatggt |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32715084 |
gttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttatggcctgctttagagcgaaatattttttggtcgataggcgatggt |
32714985 |
T |
|
| Q |
375 |
aaaagtgttggtgcctggagtcaaatgtggattgaggagaggctttgtgtgtccgagttagaaattgatattccgcaatagtgtaaagagatgaaggttg |
474 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32714984 |
aaaagtgttggagcctggattcaaatgtggattgaggagaggctttgtgtgtccgagttagaaattgatattccgcaacagtgtaaagagatgaaggttg |
32714885 |
T |
|
| Q |
475 |
cagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttgccttatgatg |
540 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32714884 |
cagatctggttgatttttatggtaattggaattttgaattgttgaatcaatggttgccttatgatg |
32714819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 318 - 540
Target Start/End: Original strand, 18567799 - 18568021
Alignment:
| Q |
318 |
ttagtaaagttatggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggc |
417 |
Q |
| |
|
||||||||| |||||||| || ||||| ||||||||||| |||||||||| |||| ||||||||||| || | |||||||||||||||||||| ||||| |
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|
| T |
18567799 |
ttagtaaagctatggcctacgatagagagaaatatttttgggtcgataggtaatggaaaaagtgttggagctttgagtcaaatgtggattgaggcgaggc |
18567898 |
T |
|
| Q |
418 |
tttgtgtgtccgagttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgtt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| |||||||||| ||||| ||| ||||||| || |||| |
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|
| T |
18567899 |
gttgtgtgtccgagttagaaattgatattccgcaagagtgtaaaaacattaaggttgcagagttggttgatttcaatggaaatcggaatttggatatgtt |
18567998 |
T |
|
| Q |
518 |
gaatcaatggttgccttatgatg |
540 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
18567999 |
gaatcaatagttgccttatgatg |
18568021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 5698467 - 5698561
Alignment:
| Q |
165 |
atgaataaggcgtgcataatgaaaatgggttggagtatatattatggatcaacttctctttgggctgaggttatgaggggtaaatatcagcgaag |
259 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||| || | |||||||| |||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
5698467 |
atgaacaaggcgtgcatcatgaagttgggttggagtatttactctggatcaaactctctttgtactgaggttatgagaggtaaatatcagcgaag |
5698561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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