View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_low_9 (Length: 489)

Name: NF3913_low_9
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_low_9
NF3913_low_9
[»] chr5 (25 HSPs)
chr5 (15-474)||(38453279-38453729)
chr5 (171-474)||(38169200-38169502)
chr5 (171-474)||(38197602-38197904)
chr5 (266-474)||(38187793-38187997)
chr5 (266-474)||(38210360-38210564)
chr5 (8-118)||(38182962-38183068)
chr5 (8-118)||(38183212-38183318)
chr5 (8-118)||(38188063-38188169)
chr5 (8-118)||(38210188-38210294)
chr5 (8-118)||(38215039-38215145)
chr5 (8-87)||(38169559-38169638)
chr5 (8-87)||(38197466-38197545)
chr5 (8-118)||(38185321-38185427)
chr5 (8-118)||(38212930-38213036)
chr5 (8-87)||(38215316-38215394)
chr5 (8-86)||(38443145-38443223)
chr5 (164-226)||(38187978-38188040)
chr5 (164-226)||(38210317-38210379)
chr5 (174-233)||(38185239-38185298)
chr5 (174-233)||(38213059-38213118)
chr5 (316-355)||(38185214-38185253)
chr5 (316-355)||(38213104-38213143)
chr5 (164-206)||(38183091-38183133)
chr5 (164-206)||(38215224-38215266)
chr5 (180-233)||(38443027-38443079)


Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 474
Target Start/End: Original strand, 38453279 - 38453729
Alignment:
15 ggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtaccgaccaagattgaaaagaggattcgag 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
38453279 ggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagt--tttgagagggtaccgaccaagattgaaaagaggattcgag 38453376  T
115 aaaaagacttatgaaacttttgggattgggacgttctgnnnnnnnnnnnaactgtgtgatgtgaatatgtgaattgtgagctgttcaatatttataagta 214  Q
    ||||||||||||||||||||||||||||||||||||||           |||| ||||||||||||||| ||||||||||| ||||| ||||||||||||    
38453377 aaaaagacttatgaaacttttgggattgggacgttctgtttttttttt-aactatgtgatgtgaatatgggaattgtgagcagttcagtatttataagta 38453475  T
215 tttgattaactgaatttcctaagtactagaattaataccacagacttatcctataagtatttgattaactatgattcaagtaaggcaatatatatagttg 314  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| || |||||||||    |||||    
38453476 tttgattaactgaatttcctaagtactagaattaatacca--gacatatcctataagtatttgattaactatgattcacgttaggcaatat----agttg 38453569  T
315 gattaactgaatttcccaaaaactaggggaatcagagagaatatatatgtattggattaacttatataagccatataacttatcaaatttacgtgaattc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38453570 gattaactgaatttcccaaaaactaggggaatcagagagaatatatatgtattggattaacttatataagccatataacttatcaaatttacgtgaattc 38453669  T
415 taagtataagccatataacttatatcccattttgttttggaaaacttatcccatttatat 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38453670 taagtataagccatataacttatatcccattttgttttggaaaacttatcccatttatat 38453729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 171 - 474
Target Start/End: Complemental strand, 38169502 - 38169200
Alignment:
171 tgatgtgaatatgtgaattgtgagctgttcaatatttataagtatttgattaactgaatttcctaagtactagaattaataccacagacttatcct---a 267  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
38169502 tgatgtgaatatgtgaattgtgagcagttcagtatttataagtatttgattaactgaatttcctaagtactagaattaataccacagacttatcctccta 38169403  T
268 taagtatttgattaactatgattcaagtaaggcaatatatatagttggattaactgaatttcccaaaaactaggggaatcagagagaatatatatgtatt 367  Q
    ||||||||||||||||| ||||||| |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38169402 taagtatttgattaactgtgattcacgtaaggcaatata----gttggattaactgaatttcccaaaaactaggggaatcagagagaatatatatgtatt 38169307  T
368 ggattaacttatataagccatataacttatcaaatttacgtgaattctaagtataagccatataacttatatcccattttgttttggaaaacttatccca 467  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
38169306 ggattaacttatataagccatgtaacttatcaaatttacgtgaattctaagtataagccatataacttatatcccattttgtttttgaaaacttatccca 38169207  T
468 tttatat 474  Q
    |||||||    
38169206 tttatat 38169200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 171 - 474
Target Start/End: Original strand, 38197602 - 38197904
Alignment:
171 tgatgtgaatatgtgaattgtgagctgttcaatatttataagtatttgattaactgaatttcctaagtactagaattaataccacagacttatcct---a 267  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
38197602 tgatgtgaatatgtgaattgtgagcagttcagtatttataagtatttgattaactgaatttcctaagtactagaattaataccacagacttatcctccta 38197701  T
268 taagtatttgattaactatgattcaagtaaggcaatatatatagttggattaactgaatttcccaaaaactaggggaatcagagagaatatatatgtatt 367  Q
    ||||||||||||||||| ||||||| ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38197702 taagtatttgattaactgtgattcacgtaaggcaatat----agttggattaactgaatttcccaaaaactaggggaatcagagagaatatatatgtatt 38197797  T
368 ggattaacttatataagccatataacttatcaaatttacgtgaattctaagtataagccatataacttatatcccattttgttttggaaaacttatccca 467  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
38197798 ggattaacttatataagccatgtaacttatcaaatttacgtgaattctaagtataagccatataacttatatcccattttgtttttgaaaacttatccca 38197897  T
468 tttatat 474  Q
    |||||||    
38197898 tttatat 38197904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 266 - 474
Target Start/End: Complemental strand, 38187997 - 38187793
Alignment:
266 tataagtatttgattaactatgattcaagtaaggcaatatatatagttggattaactgaatttcccaaaaactaggggaatcagagagaatatatatgta 365  Q
    ||||||||||||||||||| ||||||| |||||||||||||    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
38187997 tataagtatttgattaactgtgattcacgtaaggcaatata----gttggattaactgaatttcctaaaaactaggggaatcagagagaatatatatgta 38187902  T
366 ttggattaacttatataagccatataacttatcaaatttacgtgaattctaagtataagccatataacttatatcccattttgttttggaaaacttatcc 465  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
38187901 ttggattaacttatataagccatgtaacttatcaaatttacgtgaattctaagtataagccatataacttatatcccattttgtttttgaaaacttatcc 38187802  T
466 catttatat 474  Q
    |||||||||    
38187801 catttatat 38187793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 266 - 474
Target Start/End: Original strand, 38210360 - 38210564
Alignment:
266 tataagtatttgattaactatgattcaagtaaggcaatatatatagttggattaactgaatttcccaaaaactaggggaatcagagagaatatatatgta 365  Q
    ||||||||||||||||||| ||||||| ||||||||||||    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
38210360 tataagtatttgattaactgtgattcacgtaaggcaatat----agttggattaactgaatttcctaaaaactaggggaatcagagagaatatatatgta 38210455  T
366 ttggattaacttatataagccatataacttatcaaatttacgtgaattctaagtataagccatataacttatatcccattttgttttggaaaacttatcc 465  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
38210456 ttggattaacttatataagccatgtaacttatcaaatttacgtgaattctaagtataagccatataacttatatcccattttgtttttgaaaacttatcc 38210555  T
466 catttatat 474  Q
    |||||||||    
38210556 catttatat 38210564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 38182962 - 38183068
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtaccgaccaagattgaaaagagg 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    ||| ||||||||||    
38182962 aagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg----agagtgaaaagagg 38183057  T
108 attcgagaaaa 118  Q
     ||||||||||    
38183058 gttcgagaaaa 38183068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 38183318 - 38183212
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtaccgaccaagattgaaaagagg 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    ||| ||||||||||    
38183318 aagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg----agagtgaaaagagg 38183223  T
108 attcgagaaaa 118  Q
     ||||||||||    
38183222 gttcgagaaaa 38183212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 38188169 - 38188063
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtaccgaccaagattgaaaagagg 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    ||| ||||||||||    
38188169 aagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg----agagtgaaaagagg 38188074  T
108 attcgagaaaa 118  Q
     ||||||||||    
38188073 gttcgagaaaa 38188063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 38210188 - 38210294
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtaccgaccaagattgaaaagagg 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    ||| ||||||||||    
38210188 aagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg----agagtgaaaagagg 38210283  T
108 attcgagaaaa 118  Q
     ||||||||||    
38210284 gttcgagaaaa 38210294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 38215039 - 38215145
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtaccgaccaagattgaaaagagg 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    ||| ||||||||||    
38215039 aagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtactg----agagtgaaaagagg 38215134  T
108 attcgagaaaa 118  Q
     ||||||||||    
38215135 gttcgagaaaa 38215145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 38169638 - 38169559
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtac 87  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
38169638 aagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtac 38169559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 38197466 - 38197545
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtac 87  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
38197466 aagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtac 38197545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 38185427 - 38185321
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtaccgaccaagattgaaaagagg 107  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    ||| |||||| |||    
38185427 aagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtactg----agagtgaaaatagg 38185332  T
108 attcgagaaaa 118  Q
    |||||||||||    
38185331 attcgagaaaa 38185321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 38212930 - 38213036
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtaccgaccaagattgaaaagagg 107  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    ||| |||||| |||    
38212930 aagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtactg----agagtgaaaatagg 38213025  T
108 attcgagaaaa 118  Q
    |||||||||||    
38213026 attcgagaaaa 38213036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 38215394 - 38215316
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggtac 87  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
38215394 aagcctaggttggatttt-ccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtac 38215316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 38443223 - 38443145
Alignment:
8 aagcataggttggatttttccaccataggtaatcatgagcttgactctcttcatcgtttgaaagtgttttgagagggta 86  Q
    |||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
38443223 aagcctaggttggatttctccaccataagtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggta 38443145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 38188040 - 38187978
Alignment:
164 aactgtgtgatgtgaatatgtgaattgtgagctgttcaatatttataagtatttgattaactg 226  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
38188040 aactatgtgatgtgaatatgtgaattgtgagcagttcagtatttataagtatttgattaactg 38187978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 38210317 - 38210379
Alignment:
164 aactgtgtgatgtgaatatgtgaattgtgagctgttcaatatttataagtatttgattaactg 226  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
38210317 aactatgtgatgtgaatatgtgaattgtgagcagttcagtatttataagtatttgattaactg 38210379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 38185298 - 38185239
Alignment:
174 tgtgaatatgtgaattgtgagctgttcaatatttataagtatttgattaactgaatttcc 233  Q
    |||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||    
38185298 tgtgaatacgtgaattgtgagcagtccaatatttataagtatttaattaactgaatttcc 38185239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 38213059 - 38213118
Alignment:
174 tgtgaatatgtgaattgtgagctgttcaatatttataagtatttgattaactgaatttcc 233  Q
    |||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||    
38213059 tgtgaatacgtgaattgtgagcagtccaatatttataagtatttaattaactgaatttcc 38213118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 38185253 - 38185214
Alignment:
316 attaactgaatttcccaaaaactaggggaatcagagagaa 355  Q
    |||||||||||||||||||||||||| |||| ||||||||    
38185253 attaactgaatttcccaaaaactaggagaattagagagaa 38185214  T

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Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 38213104 - 38213143
Alignment:
316 attaactgaatttcccaaaaactaggggaatcagagagaa 355  Q
    |||||||||||||||||||||||||| |||| ||||||||    
38213104 attaactgaatttcccaaaaactaggagaattagagagaa 38213143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 38183091 - 38183133
Alignment:
164 aactgtgtgatgtgaatatgtgaattgtgagctgttcaatatt 206  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||    
38183091 aactatgtgatgtgaatatgtgaattgtgagcagttcagtatt 38183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 38215266 - 38215224
Alignment:
164 aactgtgtgatgtgaatatgtgaattgtgagctgttcaatatt 206  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||    
38215266 aactatgtgatgtgaatatgtgaattgtgagcagttcagtatt 38215224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 38443079 - 38443027
Alignment:
180 tatgtgaattgtgagctgttcaatatttataagtatttgattaactgaatttcc 233  Q
    ||||||||||||||| | ||||| ||||||| |||||| |||||||||||||||    
38443079 tatgtgaattgtgagatattcaa-atttatatgtatttcattaactgaatttcc 38443027  T

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