View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3914_high_1 (Length: 446)
Name: NF3914_high_1
Description: NF3914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3914_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 51998731 - 51999161
Alignment:
| Q |
1 |
agcaaaattagaagaaacgccacgtgctatatataatctagtaagagccaaccattcgaccaaaactagtgagggttaaaataatggactaaattcaacc |
100 |
Q |
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| T |
51998731 |
agcaaaattagaagaaacaccacgtgctatatataatctagtaagagccaaccattcgaccaaaactagtgagggttaaaataatggactaaattcaacc |
51998830 |
T |
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| Q |
101 |
atcaaccaaaactaaggattatgcatatatagcacagccaaccatgtatctctacaactattacatgtaattgggcagcatcaaaaactaaaaggaataa |
200 |
Q |
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| T |
51998831 |
atcaaccaaaactaaggattatgcatatatagcacagccaaccatgtatctctacaactattacatgtaattgggcagcatcaaaaactaaaaggagtaa |
51998930 |
T |
|
| Q |
201 |
tcgattttcaccaagatttctctgtttgattaagaatgctccatatgttttgaaattggacggatattttgattccaattgttcaccaatatctgccaag |
300 |
Q |
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| T |
51998931 |
tcgattttcaccaagatttctctgtttgattaagaatgccccatatgttttgaaattggacggatatttagattccaattgttcaccaatatctgccaag |
51999030 |
T |
|
| Q |
301 |
ttgaccaggattaccttccatgcttttttccactagaatcctctttcgtttcatccaagttgcaataggatcaagaacaacgactattgatggctcggtc |
400 |
Q |
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| T |
51999031 |
ttgaccaggattaccttccatgcttttttccactagaatcctttttcgtttcatccaagttgcaataggatcaagaacaacgactattgatggctcggtc |
51999130 |
T |
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| Q |
401 |
gcaataggataatgaataacaactaccgttg |
431 |
Q |
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| T |
51999131 |
gcaataggacaatgaataacaactaccgttg |
51999161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 88 - 340
Target Start/End: Complemental strand, 52000907 - 52000655
Alignment:
| Q |
88 |
actaaattcaaccatcaaccaaaactaaggattatgcatatatagcacagccaaccatgtatctctacaactattacatgtaattgggcagcatcaaaaa |
187 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||| ||| ||||||||||||| ||||||| || ||||||||||| |
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| T |
52000907 |
actaaattcaaccgtcaaccaaaacttaggattatgcatatatagcagagctaaccatgcatccctacaactattacttgtaattaggtagcatcaaaaa |
52000808 |
T |
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| Q |
188 |
ctaaaaggaataatcgattttcaccaagatttctctgtttgattaagaatgctccatatgttttgaaattggacggatattttgattccaattgtt-cac |
286 |
Q |
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|||||| |||||||| | || ||||||| |||||||||||||||||||||| | | ||||||| ||||||||| |||||| ||||| ||| || ||| |
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| T |
52000807 |
ctaaaacgaataatcaaattccaccaagttttctctgtttgattaagaatgactcgtctgttttggaattggacgaatatttagattcttatttttccac |
52000708 |
T |
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| Q |
287 |
caatatctgccaagttgaccaggattaccttccatgcttttttccactagaatc |
340 |
Q |
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| T |
52000707 |
caatatctgtcaagttgaccaggcttaccat-cattgttatttccactagaatc |
52000655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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