View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3914_low_10 (Length: 278)

Name: NF3914_low_10
Description: NF3914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3914_low_10
NF3914_low_10
[»] chr7 (25 HSPs)
chr7 (1-89)||(22831546-22831634)
chr7 (1-89)||(22805824-22805912)
chr7 (17-89)||(22840573-22840645)
chr7 (1-89)||(22858934-22859022)
chr7 (19-89)||(22810159-22810232)
chr7 (6-89)||(22842685-22842771)
chr7 (1-89)||(22886010-22886106)
chr7 (1-89)||(22815542-22815632)
chr7 (1-89)||(22873661-22873748)
chr7 (164-216)||(22885002-22885054)
chr7 (97-185)||(22803682-22803770)
chr7 (1-66)||(22841175-22841240)
chr7 (97-185)||(22870180-22870268)
chr7 (27-89)||(22894459-22894520)
chr7 (97-153)||(22829409-22829465)
chr7 (213-278)||(15680868-15680933)
chr7 (218-278)||(2334319-2334379)
chr7 (46-82)||(22881079-22881115)
chr7 (97-153)||(22887676-22887732)
chr7 (219-278)||(4794959-4795018)
chr7 (27-89)||(22876431-22876492)
chr7 (219-272)||(18035806-18035858)
chr7 (218-278)||(5409771-5409831)
chr7 (218-278)||(9778564-9778624)
chr7 (97-153)||(22874305-22874361)
[»] chr1 (8 HSPs)
chr1 (1-89)||(21150111-21150199)
chr1 (218-278)||(25934686-25934746)
chr1 (219-278)||(10577676-10577735)
chr1 (218-278)||(32461393-32461453)
chr1 (218-278)||(41597410-41597470)
chr1 (218-277)||(9828115-9828174)
chr1 (219-278)||(12919004-12919063)
chr1 (218-278)||(46348323-46348383)
[»] chr2 (7 HSPs)
chr2 (217-278)||(24009354-24009415)
chr2 (218-274)||(18054716-18054772)
chr2 (218-278)||(36096304-36096364)
chr2 (218-278)||(35056938-35056998)
chr2 (218-278)||(20242667-20242727)
chr2 (217-278)||(26769581-26769642)
chr2 (217-278)||(34784910-34784971)
[»] chr8 (8 HSPs)
chr8 (218-278)||(34450961-34451021)
chr8 (218-277)||(3951476-3951535)
chr8 (219-278)||(43737752-43737811)
chr8 (222-276)||(4122182-4122236)
chr8 (217-278)||(26902103-26902164)
chr8 (220-278)||(3025610-3025668)
chr8 (218-276)||(18964251-18964309)
chr8 (218-278)||(22652046-22652106)
[»] chr3 (6 HSPs)
chr3 (218-278)||(13845465-13845525)
chr3 (219-273)||(15864897-15864950)
chr3 (218-278)||(35222997-35223057)
chr3 (218-278)||(55401134-55401194)
chr3 (217-278)||(20503524-20503585)
chr3 (218-278)||(15796223-15796283)
[»] chr6 (9 HSPs)
chr6 (218-277)||(18367907-18367966)
chr6 (218-278)||(33001229-33001289)
chr6 (218-278)||(16488519-16488579)
chr6 (218-278)||(17327590-17327650)
chr6 (219-277)||(9658939-9658998)
chr6 (218-277)||(24645541-24645600)
chr6 (220-278)||(12696388-12696446)
chr6 (221-278)||(32978842-32978899)
chr6 (217-278)||(34595193-34595254)
[»] chr5 (9 HSPs)
chr5 (219-278)||(6401568-6401627)
chr5 (218-278)||(21576685-21576745)
chr5 (218-278)||(21814331-21814391)
chr5 (222-274)||(30098982-30099034)
chr5 (221-278)||(19452998-19453055)
chr5 (218-278)||(16304366-16304426)
chr5 (218-278)||(21522820-21522880)
chr5 (218-278)||(21533386-21533446)
chr5 (218-278)||(42029811-42029871)
[»] scaffold0623 (1 HSPs)
scaffold0623 (219-276)||(5926-5983)
[»] chr4 (7 HSPs)
chr4 (218-278)||(5414101-5414161)
chr4 (219-277)||(30982808-30982866)
chr4 (218-277)||(24613630-24613689)
chr4 (218-272)||(19097835-19097888)
chr4 (218-278)||(23292926-23292986)
chr4 (218-278)||(35161095-35161155)
chr4 (217-277)||(36635390-36635450)
[»] scaffold0361 (1 HSPs)
scaffold0361 (215-278)||(14586-14649)
[»] scaffold0083 (1 HSPs)
scaffold0083 (217-278)||(45469-45530)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22831634 - 22831546
Alignment:
Q  1 ttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgtt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22831634 ttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacacaagcattattcattcacaaactataatcatgtt 22831546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22805912 - 22805824
Alignment:
Q  1 ttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgtt 89  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  22805912 tttttcttcacttaggacaaaatcttataaataataaacaccgaacagaactacacaagcattattcattctcaaactataatcatgtt 22805824  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 22840645 - 22840573
Alignment:
Q  17 acaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgtt 89  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  22840645 acaaaatcttataaataataaacaccaaacagaactacagaagcatcatttattcacaaactataatcatgtt 22840573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22859022 - 22858934
Alignment:
Q  1 ttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgtt 89  Q
    |||| |||||||| | |||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  22859022 ttttccttcacttagcacaaaatcttataaataacaaacaccgaacagaactacacaagcattgttcattcacaaactaaaatcatgtt 22858934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 22810232 - 22810159
Alignment:
Q  19 aaaatcttataaataataaacaccgaacag---aactacagaagcattattcattcacaaactataatcatgtt 89  Q
    ||||||||||||||||||||||  ||||||   |||||||||||||||||||||||||||||||||||||||||    
T  22810232 aaaatcttataaataataaacattgaacagcagaactacagaagcattattcattcacaaactataatcatgtt 22810159  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 22842771 - 22842685
Alignment:
Q  6 cttcactttggacaaaatcttataaataataaacaccgaacag---aactacagaagcattattcattcacaaactataatcatgtt 89  Q
    |||||||| | ||||||||||||||||||||||||  ||||||   ||||||||||||||| ||||||||||||| |||||||||||    
T  22842771 cttcacttggcacaaaatcttataaataataaacattgaacagcagaactacagaagcattgttcattcacaaacaataatcatgtt 22842685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22886106 - 22886010
Alignment:
Q  1 ttttacttcactttggacaaaatcttataaataataaacaccgaaca--------gaactacagaagcattattcattcacaaactataatcatgtt 89  Q
    |||| |||||||| | |||||||||||||||||||||||||||||||        ||||||||||||||| |||||||| |||||||||||||||||    
T  22886106 ttttccttcacttagcacaaaatcttataaataataaacaccgaacactcgaacagaactacagaagcatgattcattctcaaactataatcatgtt 22886010  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22815632 - 22815542
Alignment:
Q  1 ttttacttcactttggacaaaatcttataaataataaa-caccgaacagaactacagaagcattattcattcacaaact-ataatcatgtt 89  Q
    |||| |||||||| | |||||||||||||||||| ||| || | |||||||||||||||||||| |||||||||||||| |||||||||||    
T  22815632 ttttccttcacttagcacaaaatcttataaataacaaaacatcaaacagaactacagaagcattgttcattcacaaactaataatcatgtt 22815542  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 22873748 - 22873661
Alignment:
Q  1 ttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgtt 89  Q
    |||| |||||||| |||||||||| |||||||||||||||| ||| |||||| || |||||||||| |||||||| | |||||||||||    
T  22873748 tttttcttcacttaggacaaaatcatataaataataaacactgaatagaactgcataagcattatt-attcacaatccataatcatgtt 22873661  T

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Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 22885054 - 22885002
Alignment:
Q  164 gttctgattttgcatatactttgttttgtccaagttttatctattgagtagat 216  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  22885054 gttctgattttgcatatactttactttgtccaagttttatctattgagtagat 22885002  T

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Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 22803770 - 22803682
Alignment:
Q  97 aagtgaaatcatgtttgagtaaataattaaatagatacatgaaagcattttctcattnnnnnnntttgttctgattttgcatatacttt 185  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||| |||| |||||       ||| |||||||||||||||||||||    
T  22803770 aagtgaaatcatgattgagtagataatttaatagatacatgaaagctttttttcattaaactcttttcttctgattttgcatatacttt 22803682  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22841240 - 22841175
Alignment:
Q  1 ttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattatt 66  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||| |||| || ||| ||||||    
T  22841240 tttttcttcactttggacaaaatcttataaataataaacactgaacataactgcataagaattatt 22841175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 22870268 - 22870180
Alignment:
Q  97 aagtgaaatcatgtttgagtaaataattaaatagatacatgaaagcattttctcattnnnnnnntttgttctgattttgcatatacttt 185  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||  |||| |||||       ||| |||||||||||||||||||||    
T  22870268 aagtgaaatcatgattgagtagataatttaatagatacatgaaagttttttttcattaaactcttttcttctgattttgcatatacttt 22870180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 22894520 - 22894459
Alignment:
Q  27 ataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgtt 89  Q
    ||||||||||||||| ||||||||||  | |||||||||| ||||||||||||||||||||||    
T  22894520 ataaataataaacactgaacagaactgtataagcattatt-attcacaaactataatcatgtt 22894459  T

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Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 22829465 - 22829409
Alignment:
Q  97 aagtgaaatcatgtttgagtaaataattaaatagatacatgaaagcattttctcatt 153  Q
    ||||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||||    
T  22829465 aagtgaattcatgcttgagtaaatagtttaatagttacatgaaagcattttctcatt 22829409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 15680933 - 15680868
Alignment:
Q  213 agattctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||| ||||||||||||||||||| | | || |||||||| || ||||| ||||||||||||||||    
T  15680933 agatcctatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtcc 15680868  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 2334379 - 2334319
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||| ||||||||||| | |||| ||||||||||| ||||| |||| |||||||||||    
T  2334379 ctatgaaacacggacactcctcggattagacgtgtttcagtgtcggacatgtgtcgtgtcc 2334319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 22881115 - 22881079
Alignment:
Q  46 cagaactacagaagcattattcattcacaaactataa 82  Q
    |||||||||||||| ||||||||||||||||||||||    
T  22881115 cagaactacagaagtattattcattcacaaactataa 22881079  T

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Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 22887732 - 22887676
Alignment:
Q  97 aagtgaaatcatgtttgagtaaataattaaatagatacatgaaagcattttctcatt 153  Q
    ||||||||||||||||||||||||  || ||||| ||||| ||| ||||||||||||    
T  22887732 aagtgaaatcatgtttgagtaaatggtttaatagttacataaaatcattttctcatt 22887676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 4795018 - 4794959
Alignment:
Q  219 tatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||| ||||||  |||||| ||||||||||  |||||||| |||||||||||||    
T  4795018 tatgaagcacagacacttcttggattagacgtgtttaggtgtcagatacgtgtcgtgtcc 4794959  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 22876492 - 22876431
Alignment:
Q  27 ataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgtt 89  Q
    ||||||||||||||   ||||||||| || |||||||||| || |||||||||||||||||||    
T  22876492 ataaataataaacaatcaacagaactgcataagcattatt-atccacaaactataatcatgtt 22876431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 18035806 - 18035858
Alignment:
Q  219 tatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtc 272  Q
    |||||||||||||||||| | |||| ||||||| |||||||||||||| |||||    
T  18035806 tatgaagcacggacactcctcggattagacgtg-ttccgtgtcagacatgtgtc 18035858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 5409771 - 5409831
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| | |||| || |||||  | ||||| ||||||||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcc 5409831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 9778624 - 9778564
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| |||||| || |||||  | ||||| ||||||||| ||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtcc 9778564  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 22874361 - 22874305
Alignment:
Q  97 aagtgaaatcatgtttgagtaaataattaaatagatacatgaaagcattttctcatt 153  Q
    ||||||| |||||||||||||| || || ||||||||||| ||||| ||| ||||||    
T  22874361 aagtgaattcatgtttgagtaagtagtttaatagatacatcaaagcttttactcatt 22874305  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21150111 - 21150199
Alignment:
Q  1 ttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacagaagcattattcattcacaaactataatcatgtt 89  Q
    |||| |||||||| | |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  21150111 ttttccttcacttagcacaaaatcttataaataataaacatcaaacagaactacagaagcattgttcattcacaaactataatcatgtt 21150199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 25934746 - 25934686
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| ||||||||| ||| |  ||||||||||||||||||||||||    
T  25934746 ctatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtcc 25934686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 10577676 - 10577735
Alignment:
Q  219 tatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||||| ||||||||| |||||  |||||||||||||| |||||||||    
T  10577676 tatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtcc 10577735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 32461393 - 32461453
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||  |||||| || |||||  | ||||||||||||||||||||||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtcc 32461453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 41597410 - 41597470
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||| ||||||| ||||||||  ||| |  ||||||||||||||||||||||||    
T  41597410 ctatgaagcacagacactccttggataaagcgtatccccgtgtcagacacgtgtcgtgtcc 41597470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 9828174 - 9828115
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtc 277  Q
    ||||||||||||||||||| | |||| ||||||||  | ||||| |||||||||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtc 9828115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 12919063 - 12919004
Alignment:
Q  219 tatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||| |||||  | ||||||| |||||  ||||||||||||||||||||||||    
T  12919063 tatgaagcacgaacacttctcggataagccgtgtccccgtgtcagacacgtgtcgtgtcc 12919004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 46348323 - 46348383
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||| | | |||| || ||||| || ||||| ||||||||||||||||    
T  46348323 ctatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtcc 46348383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 24009415 - 24009354
Alignment:
Q  217 tctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  24009415 tctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtcc 24009354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 18054716 - 18054772
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgt 274  Q
    |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||    
T  18054716 ctatgaagcacggacattccttggataaggcgtgtttccgtgtcagacacgtgtcgt 18054772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 36096304 - 36096364
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  36096304 ctatgaagcacggacactctttggttaaggcgtgtccccgtgtcagacacgtgtcgtgtcc 36096364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 35056998 - 35056938
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| |  ||| || |||||||||||||| ||||||||||||||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtcc 35056938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 20242667 - 20242727
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||| ||||||||| ||||||| |||||   |||||||||||||||| ||||||    
T  20242667 ctatgaagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtcc 20242727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 26769642 - 26769581
Alignment:
Q  217 tctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||||||| | |||| || |||||  | ||||| ||||||||||||||||    
T  26769642 tctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtcc 26769581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 34784910 - 34784971
Alignment:
Q  217 tctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||| ||||||| | | ||||| |||||  |||||||||||| |||||||||||    
T  34784910 tctatgaagcacagacactcctcgaataaggcgtgtccccgtgtcagacaggtgtcgtgtcc 34784971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 34450961 - 34451021
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  34450961 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtcc 34451021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 3951476 - 3951535
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtc 277  Q
    |||||||||||||| |||| |||||| || |||||| |||||||||||||||||||||||    
T  3951476 ctatgaagcacggaaactccttggattaggcgtgttcccgtgtcagacacgtgtcgtgtc 3951535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 43737752 - 43737811
Alignment:
Q  219 tatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||||| ||||||||| ||| |  ||||||||||||| ||||||||||    
T  43737752 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtcc 43737811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 4122182 - 4122236
Alignment:
Q  222 gaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgt 276  Q
    |||||||||||||||||||||| ||||||||| | |||||  |||||||||||||    
T  4122182 gaagcacggacactctttggattagacgtgttccggtgtccaacacgtgtcgtgt 4122236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 26902103 - 26902164
Alignment:
Q  217 tctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||||||| |  |||||| |||||  ||||| ||||||||||||||||||    
T  26902103 tctatgaagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtcc 26902164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 3025668 - 3025610
Alignment:
Q  220 atgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||| | |||| || |||||  | ||||||||||||||||||||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtcc 3025610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 18964309 - 18964251
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgt 276  Q
    ||||||||||| ||||||| | ||||||| ||||| ||||||| ||||| |||||||||    
T  18964309 ctatgaagcacagacactcctcggataaggcgtgtctccgtgttagacaggtgtcgtgt 18964251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 22652106 - 22652046
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| | |||| ||||||||  | ||||| ||||| ||||||||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtcc 22652046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 13845465 - 13845525
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  13845465 ctatgaagcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtcc 13845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 15864950 - 15864897
Alignment:
Q  219 tatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcg 273  Q
    ||||||||||||||||||||||||| || |||| | |||||||||||||||||||    
T  15864950 tatgaagcacggacactctttggattaggcgtg-tcccgtgtcagacacgtgtcg 15864897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 35223057 - 35222997
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| | ||||||  |||||  |||||||||||||||||| |||||    
T  35223057 ctatgaagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtcc 35222997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 55401194 - 55401134
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| | |||| || ||||| || ||||| ||||||||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtcc 55401134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 20503585 - 20503524
Alignment:
Q  217 tctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||||||| | |||| || |||||  | |||||||||| |||||||||||    
T  20503585 tctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtcc 20503524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 15796223 - 15796283
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||| ||||||||||||| || |||||| | ||||  ||||||||| ||||||    
T  15796223 ctatgaagcacgaacactctttggattaggcgtgttccggtgttggacacgtgttgtgtcc 15796283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 18367966 - 18367907
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtc 277  Q
    ||||||||||||||||||| ||||||||| |||||  |||||||||||| ||||||||||    
T  18367966 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtc 18367907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 33001229 - 33001289
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||  ||||||||||||| || ||| |||| ||||||||||||||||||||||    
T  33001229 ctatgaagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtcc 33001289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 16488519 - 16488579
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||| ||| || ||||||||| |||||  ||||| ||||||||||||||||||    
T  16488519 ctatgaagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtcc 16488579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 17327590 - 17327650
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| | |||| || |||||  | ||||||||||||||||||||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtcc 17327650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 9658998 - 9658939
Alignment:
Q  219 tatgaagcacggacactctttgga-taagacgtgtttccgtgtcagacacgtgtcgtgtc 277  Q
    |||||||||||||||||| ||||| | || |||||| | |||||||||||||||||||||    
T  9658998 tatgaagcacggacactccttggaattaggcgtgttccggtgtcagacacgtgtcgtgtc 9658939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 24645600 - 24645541
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtc 277  Q
    ||||||||||| ||||||||| |||| |||||||| |  ||||| |||||||||||||||    
T  24645600 ctatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtc 24645541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 12696446 - 12696388
Alignment:
Q  220 atgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||| ||||||| |||||||||  ||||  | ||||||||||||||||||||||    
T  12696446 atgaagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtcc 12696388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 32978842 - 32978899
Alignment:
Q  221 tgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||| |||||| ||||||||  | ||||| |||| |||||||||||    
T  32978842 tgaagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtcc 32978899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 34595254 - 34595193
Alignment:
Q  217 tctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||||||| | |||| ||  ||||  | ||||||||||||||||||||||    
T  34595254 tctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtcc 34595193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 6401627 - 6401568
Alignment:
Q  219 tatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||||| ||||||||| ||| |  ||||||||||||||||||||||||    
T  6401627 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtcc 6401568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 21576685 - 21576745
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| | |||| || |||||  | ||||||||||||||||||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtcc 21576745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 21814391 - 21814331
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||| ||| || ||||||||| |||||  ||||| ||||||||||||||||||    
T  21814391 ctatgaagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtcc 21814331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 30098982 - 30099034
Alignment:
Q  222 gaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgt 274  Q
    |||||||| |||||| ||||||||| |||||  ||||||||||||||||||||    
T  30098982 gaagcacgaacactccttggataaggcgtgtccccgtgtcagacacgtgtcgt 30099034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 19452998 - 19453055
Alignment:
Q  221 tgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||| ||| ||||||||| ||| | ||||||| ||||| |||||||||||    
T  19452998 tgaagcacggacgctccttggataaggcgtatctccgtgtgagacatgtgtcgtgtcc 19453055  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 16304366 - 16304426
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||| || | |||| |||||||| || ||||| | ||||||||||||||    
T  16304366 ctatgaagcacggacattcctcggattagacgtgtctcggtgtcgggcacgtgtcgtgtcc 16304426  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 21522880 - 21522820
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||| ||||||||||||||||||| || |||||  | ||| | ||||||||||||||||    
T  21522880 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtcc 21522820  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 21533446 - 21533386
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||| ||||||||||||||||||| || |||||  | ||| | ||||||||||||||||    
T  21533446 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtcc 21533386  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 42029871 - 42029811
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||| |||||||||||| | ||||||| ||||| | |||| |||||| |||||||||||    
T  42029871 ctatgatgcacggacactcctcggataaggcgtgtctacgtgacagacatgtgtcgtgtcc 42029811  T

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Target: scaffold0623 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 5926 - 5983
Alignment:
Q  219 tatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgt 276  Q
    ||||| |||||||||||| ||||||||| ||||| || ||||||||||||||||||||    
T  5926 tatgaggcacggacactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgt 5983  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 5414101 - 5414161
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| |||||||||  ||||  | ||||||||||||||||||||||    
T  5414101 ctatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtcc 5414161  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 30982808 - 30982866
Alignment:
Q  219 tatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtc 277  Q
    ||||||||||||||||||||||||| || |||||  | ||||| |||||||||||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtc 30982866  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 24613630 - 24613689
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtc 277  Q
    ||||||||||||||||||| | |||| ||||||||    |||||||||||||||||||||    
T  24613630 ctatgaagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtc 24613689  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 19097835 - 19097888
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtc 272  Q
    ||||||||||| |||||||||||| |||| |||||  ||||||||||||||||||    
T  19097835 ctatgaagcacagacactctttgg-taaggcgtgtccccgtgtcagacacgtgtc 19097888  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 23292926 - 23292986
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||||||| | |||| || |||||  | ||||| ||||||||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcc 23292986  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 35161155 - 35161095
Alignment:
Q  218 ctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    |||||||||||||||||| || |||| ||  ||||| | ||||| ||||||||||||||||    
T  35161155 ctatgaagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgtgtcc 35161095  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 36635450 - 36635390
Alignment:
Q  217 tctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtc 277  Q
    |||||||||||||||||||||| |||| || |||||  | ||||| ||| |||||||||||    
T  36635450 tctatgaagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtc 36635390  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 14649 - 14586
Alignment:
Q  215 attctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||||| |||||| || ||| || ||||| || ||||| ||||||||||||||||    
T  14649 attctatgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtcc 14586  T

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Target: scaffold0083 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 45469 - 45530
Alignment:
Q  217 tctatgaagcacggacactctttggataagacgtgtttccgtgtcagacacgtgtcgtgtcc 278  Q
    ||||||||||||| ||| ||||||||| || | |||  | ||||||||||||||||||||||    
T  45469 tctatgaagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtcc 45530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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