View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3914_low_2 (Length: 405)
Name: NF3914_low_2
Description: NF3914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3914_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 48666450 - 48666055
Alignment:
| Q |
1 |
tcaagagaaacaggtaagaaggtgattactaatgaatgagccaaaattgaacgtacctggctatttcagcacgtcttctggcctgttcagctatcataga |
100 |
Q |
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| T |
48666450 |
tcaagagaaacaggtaagaaggtgattactaatgaatgagccaaaattgaatgtacctggctatttcagcacgtcttctggcctgttcagctatcataga |
48666351 |
T |
|
| Q |
101 |
agaccgccttccactgacctccaagcctgaggtcatctgattcagtccttgcagacttccctgagaaagaacccactttgctgccctgtcttccgtccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48666350 |
agaccgccttccactgacctccaagcctgaggtcatctgattcagtccttgcagacttccctgagaaagaacccactttgctgccctgtcttccgtccca |
48666251 |
T |
|
| Q |
201 |
tagtctttcttagatgtaaaagcagtctgttgaaatagacaaatcaatacacataccacaactagcaaaggcttatctaattgggacaacattataaggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48666250 |
tagtctttcttagatgtaaaagcagtctgttgaaatagacaaatcaatacgcataccacaactagcaaaggcttatctaattgggacaacattataaggc |
48666151 |
T |
|
| Q |
301 |
gaaactggagggattctttactaacctttctgtcaaataggagattccatgcttctccactcaaggcatagcgcactgtgaacttgatgatgtcca |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48666150 |
gaaactggagggattctttactaacctttctgtcaaataggagattccatgcttctccactcaaggcatagcgcactgtgaacttgatgatgtcca |
48666055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 8600207 - 8600130
Alignment:
| Q |
160 |
cctgagaaagaacccactttgctgccctgtcttccgtcccatagtctttcttagatgtaaaagcagtctgttgaaata |
237 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8600207 |
cctgagaaagaacccactttgctgccctatcttccgtcccatagtctttcttagatgtaaaagcagtctgttaaaata |
8600130 |
T |
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