View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3914_low_3 (Length: 387)
Name: NF3914_low_3
Description: NF3914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3914_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 383
Target Start/End: Complemental strand, 3148568 - 3148205
Alignment:
| Q |
21 |
gctgcagctctaacttgttcaaaatataggacctgcactacaactcgaagtggaagacgttcgttctgtgcagcatgtgccgatgcatcagcagtcaatt |
120 |
Q |
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| T |
3148568 |
gctgcagctctaacttgttcaaaatataggacctgcactacaactcgaagtggaagacgttcgttctgtgcagcatgtgccgatgcatcagcagtcaatt |
3148469 |
T |
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| Q |
121 |
tcttgacattcatcagtccacatatattcttcttttcagattttgtcaaacttgggtgctcctgaaaatgattgactcaaatgaatattacaaatataaa |
220 |
Q |
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| T |
3148468 |
tcttgacattcatcagtccacatatattcttcttttcagatttagtcaaacttgggtgctcctgaaaatgattgactcaaatgaatattacaaatataaa |
3148369 |
T |
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| Q |
221 |
cattattaagaaacagaacatattggtgtagaaatagaaaaatggttaagtgttctaaaatgtgatatcctggtagttatgcaggcattgatcaggcaaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3148368 |
cattattaagaaacagaacatattggtgtagaaatagaaaaatggttaagtgttctaaaatgtgatatcctggtagttatgcaggcattgatcaggcaaa |
3148269 |
T |
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| Q |
321 |
aagt-nnnnnnnnnctcaatacaataccgagacttttgttggaagacgtgtatattcttcgaca |
383 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
3148268 |
aagtaaaaaaaaaactcaatacaataccgagacttttgttggaagacgtgtacattgttcgaca |
3148205 |
T |
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