View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3914_low_6 (Length: 350)
Name: NF3914_low_6
Description: NF3914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3914_low_6 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 923397 - 923077
Alignment:
| Q |
13 |
aatatatgcaataatccaataagttagggatgtgaaatcccttcaaaataaaaaacctcttctaggtgaccctttgagatacttcacaactttataagan |
112 |
Q |
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| T |
923397 |
aatatatgcaataatccaataagttagggatgtgaaatcccttcaaaataaaaaacctcttttaggtgaccctttgagatacttcacaactctataagtt |
923298 |
T |
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| Q |
113 |
nnnnnnnnnaatgacaaataattattatataaataaaaagaataaatctcctgcaaactctgcaagatgtttcataatgaatgattgttgatgtagtaag |
212 |
Q |
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| T |
923297 |
tttttttttaatgacaaataattattatataaataaaaagaataaatctccagcaaattctgcaagatgtttcataatgaatgattgttgatgtagtaag |
923198 |
T |
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| Q |
213 |
aaattgacttaattgttgtgttacaaaagctatgtctggtctgcttgttgtgagattcaataattttccgaccattcttctgtagcttgcaatatcacca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
923197 |
aaattgacttaattgttgtgttacaaaagctatgtctggtctgcttgttgtgagattcaataattttccgaccattcttttgtagcttgcaatatcacca |
923098 |
T |
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| Q |
313 |
aacgtttttcagagtcttggt |
333 |
Q |
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| T |
923097 |
aacgatttttagagtcttggt |
923077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 13989778 - 13989690
Alignment:
| Q |
211 |
agaaattgacttaattgttgtgttacaaaagctatgtctggtctgcttgttgtgagattcaataattttccgaccattcttctgtagct |
299 |
Q |
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| T |
13989778 |
agaaattgacttagttgttgagttacaaaagatatgtctggtctggttgtggtgagatacaagagttttcccacaagtcttctatagct |
13989690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 26135283 - 26135152
Alignment:
| Q |
168 |
aactctgcaagatgtttcataatgaatgattgttgatgtagtaagaaattgacttaattgttgtgttacaaaagctatgtctggtctgcttgttgtgaga |
267 |
Q |
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||||||||||| || |||||||||| | || |||| || | ||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||| |
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| T |
26135283 |
aactctgcaagctgcttcataatgagtaatggttggagttgatagaaattgacttagttgttgagttacaaaagctatgtctggtctggttgtggtgaga |
26135184 |
T |
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| Q |
268 |
ttcaataattttccgaccattcttctgtagct |
299 |
Q |
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| T |
26135183 |
tacaagagttttcccacaagtcttctatagct |
26135152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 94139 - 94227
Alignment:
| Q |
211 |
agaaattgacttaattgttgtgttacaaaagctatgtctggtctgcttgttgtgagattcaataattttccgaccattcttctgtagct |
299 |
Q |
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| T |
94139 |
agaaattgacttagttgttgagttacaaaagatatgtctggtctggttgtggtgagatacaagagttttcccacaagtcttctatagct |
94227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 31193485 - 31193573
Alignment:
| Q |
211 |
agaaattgacttaattgttgtgttacaaaagctatgtctggtctgcttgttgtgagattcaataattttccgaccattcttctgtagct |
299 |
Q |
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| T |
31193485 |
agaaattgacttagttgttgagttacaaaggctatgtctggtctggttgtggtgagatacaagagttttcccacaagtcttctatagct |
31193573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 52774828 - 52774740
Alignment:
| Q |
211 |
agaaattgacttaattgttgtgttacaaaagctatgtctggtctgcttgttgtgagattcaataattttccgaccattcttctgtagct |
299 |
Q |
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| T |
52774828 |
agaaattgacttagttgttgagttacaaaggctatgtctggtctggttgtggtgagatacaagagttttcccacaagtcttctatagct |
52774740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 16258318 - 16258248
Alignment:
| Q |
211 |
agaaattgacttaattgttgtgttacaaaagctatgtctggtctgcttgttgtgagattcaataattttcc |
281 |
Q |
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| T |
16258318 |
agaaattgacttagttgttgagttacaaaagctatgtttggtctggttgtggtgagatacaagagttttcc |
16258248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 21033663 - 21033622
Alignment:
| Q |
122 |
aatgacaaataattattatataaataaaaagaataaatctcc |
163 |
Q |
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| T |
21033663 |
aatgacaaatatatattataaaaataaaaagaataaatctcc |
21033622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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