View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3914_low_7 (Length: 334)
Name: NF3914_low_7
Description: NF3914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3914_low_7 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0530 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 50420909 - 50421141
Alignment:
| Q |
1 |
tcacattcatggaagtgataaatgaaaaagtatcgttcacgaaaatattagctcaacctaagcatattgatctcaaggagtacacatccgtaatagacat |
100 |
Q |
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| T |
50420909 |
tcacattcatggaagtgataaatgaaaaagtatcgttcacgaaaatattagctcaacctaagcatattgatctcaaggagtacacatccgtaatagacat |
50421008 |
T |
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| Q |
101 |
atcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttggccaactaattgggttataatata |
200 |
Q |
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| T |
50421009 |
atcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttggccaactaattgggttataatata |
50421108 |
T |
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| Q |
201 |
tttccttaaaaattacaatgcattgtaagaagc |
233 |
Q |
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| T |
50421109 |
tttccttaaaaattacaatgcattgtaagaagc |
50421141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 18146010 - 18145914
Alignment:
| Q |
77 |
ggagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttac |
173 |
Q |
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| T |
18146010 |
ggagtacacatccataatagacatatcgaaattattgtgcgtcaaataacatccaaagtcttggtttcagaagatggaatgtctaatgtatttttac |
18145914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 25631464 - 25631347
Alignment:
| Q |
77 |
ggagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttg |
176 |
Q |
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| T |
25631464 |
ggagtacacatccataatagacatatcgaaattattgtgcgtcaaataacatccaaagtattggtttcagaagatggaatgtctaatgtatttttacctg |
25631365 |
T |
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| Q |
177 |
gccaactaattgggttat |
194 |
Q |
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| T |
25631364 |
gtgaattaattggattat |
25631347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 48191225 - 48191108
Alignment:
| Q |
77 |
ggagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttg |
176 |
Q |
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||||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||| || ||| || ||| || || ||||||||||||| || |
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| T |
48191225 |
ggagtacacatccataatagacatatcgaaattattgtgcgtcaaatgacatccaaagtcttggtctcagaagatggaatgtttaatgtatttttacctg |
48191126 |
T |
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| Q |
177 |
gccaactaattgggttat |
194 |
Q |
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| T |
48191125 |
gtgaattaattggattat |
48191108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 229237 - 229330
Alignment:
| Q |
77 |
ggagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttt |
170 |
Q |
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||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| || ||| || ||| ||||| |||| |
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| T |
229237 |
ggagtacacatccataatagacatatcgaaattattgtgcgtcaaataacatccaaagtcttggtttcagaagatggaatgtctaatgtttttt |
229330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 43173940 - 43174057
Alignment:
| Q |
77 |
ggagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttg |
176 |
Q |
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||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| | || | || ||| || ||| ||||||||||||| || |
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| T |
43173940 |
ggagtacacatccataatagacataacaaaattattgtgcgtcaaataacatccaaagtcttggctttagaagatggaatgtctaatgtatttttacctg |
43174039 |
T |
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| Q |
177 |
gccaactaattgggttat |
194 |
Q |
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| T |
43174040 |
gtgaattaattggattat |
43174057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 45212509 - 45212568
Alignment:
| Q |
79 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctt |
138 |
Q |
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| T |
45212509 |
agtacacatccataatagacatatcaaaattattgtgcgtcaaataacatccaaagtctt |
45212568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0530 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 3981 - 4073
Alignment:
| Q |
78 |
gagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttt |
170 |
Q |
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|||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||| || ||| || ||| |||||||||| |
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| T |
3981 |
gagtacacatccataatagacaaatcgaaattattgtgcgtcaaataacatccaaagtcttgatttcagaagatggaatgtctaatgtatttt |
4073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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