View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3914_low_8 (Length: 314)
Name: NF3914_low_8
Description: NF3914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3914_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 40728843 - 40729129
Alignment:
| Q |
18 |
gaagtgattatgtcggaaagtttttggtattgaggtgtgccttgttgtgtttccaaaatttcatttgtgttgttcataatctttctgaagaggatgttgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40728843 |
gaagtgattatgtcggaaagtttttggtattgaggtgtgccttgttgtgtttccaaaatttcatttgtgttgttcataatctttctgaagaggatgttgg |
40728942 |
T |
|
| Q |
118 |
atatttgtatgtgaataaggaagatgaaggaaagagggaggatgagagttaaggtgatttggctgaagattttcctccatgaaattatgatcttgtagga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40728943 |
atatttgtatgtgaataaggaagatgaaggaaagagggaggatgagagttaaggtgatttggctgaagattttcctccatgaaattatgatcttgtagga |
40729042 |
T |
|
| Q |
218 |
ttctttgtagattccaaagagtcctagaaattgcatctcttcttgttctctatccatggttttgtttttcttcaatggctacctatg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40729043 |
ttctttgtagattccaaagagtcctagaaattgcatctcttcttgttctctatccatggttttgtttttcttcaatggctacctatg |
40729129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 135 - 285
Target Start/End: Complemental strand, 10107382 - 10107232
Alignment:
| Q |
135 |
aggaagatgaaggaaagagggaggatgagagttaaggtgatttggctgaagattttcctccatgaaattatgatcttgtaggattctttgtagattccaa |
234 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
10107382 |
aggaagatgaaggagagaggtaggagaagagttaaggtgatttgtgtgaagatttttctccatgaaaatatgatcttgaaggattctttgtagcaaccaa |
10107283 |
T |
|
| Q |
235 |
agagtcctagaaattgcatctcttcttgttctctatccatggttttgtttt |
285 |
Q |
| |
|
||| || ||||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
10107282 |
agaaaccaagaaattgcatgtcttcttgttctttgtccatggttttgtttt |
10107232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University