View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3915_high_1 (Length: 480)
Name: NF3915_high_1
Description: NF3915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3915_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Complemental strand, 45316859 - 45316410
Alignment:
| Q |
20 |
aatgtttcataatatatatcttatatttaaatgccattctgtatcttcnnnnnnnnnnnnnnaagaaagtatgtcgttctgtattattttaaaaaagcat |
119 |
Q |
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| T |
45316859 |
aatgtttcataatatatatcttatatttaaatgccattctgtatcttcttttttttttt---aagaaagtatgtcgttctgtattattttaaaaaagcat |
45316763 |
T |
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| Q |
120 |
tgagatgtggttgaaaataaacttaaatcaaaaaatggtctttacatgtgttgcagatgaatgcattgaaaaacttgggactgaatgttgttaaggcaag |
219 |
Q |
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| T |
45316762 |
tgagatgtggttgaaaataaacttaaatcaaaaaatggtctttacatgtgttgcagatgaatgcattgaaaaacttgggactgaatgttgttaaggcaag |
45316663 |
T |
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| Q |
220 |
cgtgtgtctggactcttctggcaagcacaacaagttttccatcacaaaggcgtaagcaatattcccgtgtattgtacatgttcgttttatggatcaaggt |
319 |
Q |
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| T |
45316662 |
cgtgtgtctggactcttctggcaagcacaacaagttttccatcacaaaggcgtaagcaatattcccgtgtattgtacatgttcgttttatggatcaaggt |
45316563 |
T |
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| Q |
320 |
tatgattagaatgtgtagtaatttatttggagatgcattgtggaactttgattgcagtgatacaggtagaaaagtggaagatccagagttgttagaggca |
419 |
Q |
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| T |
45316562 |
tatgattagaatgtgtagtaatttatttggagatgcattgtggaactttgattgcagtgatacaggtagaaaagtggaagatccagagttgttagaggca |
45316463 |
T |
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| Q |
420 |
atccgtttgacgattttaaataacatgatcacgtatcacccggtacctatgct |
472 |
Q |
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| T |
45316462 |
atccgtttgacgattttaaataacatgatcacgtatcacccggtacctatgct |
45316410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 371 - 464
Target Start/End: Complemental strand, 969051 - 968958
Alignment:
| Q |
371 |
ttgcagtgatacaggtagaaaagtggaagatccagagttgttagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccggta |
464 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||| ||||||||||||| |
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| T |
969051 |
ttgcagtgatactggcagaaaagtggaagatccagagttgttagaggcaattcgtttgacaattataaataatctgattcagtatcacccggta |
968958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 969899 - 969792
Alignment:
| Q |
168 |
tgttgcagatgaatgcattgaaaaacttgggactgaatgttgttaaggcaagcgtgtgtctggactcttctggcaagcacaacaagttttccatcacaaa |
267 |
Q |
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| T |
969899 |
tgttgtagatgagagcattaaaagacttaggcctcaatgtcgtaaaggcaaatgtctttctcgattcttctggcaagcacaacaagttttccatcacaaa |
969800 |
T |
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| Q |
268 |
ggcgtaag |
275 |
Q |
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||||||| |
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| T |
969799 |
agcgtaag |
969792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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