View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3915_high_10 (Length: 237)
Name: NF3915_high_10
Description: NF3915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3915_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33820737 - 33820954
Alignment:
| Q |
1 |
ctcttctaacagtctccaaaaatttcctcccaaacaaacttttggactacgcactctagttatagtacgtgaatagatcttcttatgaatctcaacaaga |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33820737 |
ctcttctaacactctccaaaaatttcctcccaaacaaacttttggactacgcactctagttatagtacgtgaataga---tcttatgaatctcaacaaga |
33820833 |
T |
|
| Q |
101 |
ttgtaccacgcactttcaagcaaaattagtgaatttctttttccacccccttcctccacttctcagatatctttgttttgtctgaattttaaaacgctga |
200 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||| | || | |
|
|
| T |
33820834 |
ttgtaccatgcactttcaagcaaactttgtgaatttctctttcca-ccccttcctccacttctcagatatctttgttttgtctggattttaaatcactca |
33820932 |
T |
|
| Q |
201 |
catgtaaaaaaggtgcaaatcc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33820933 |
catgtaaaaaaggtgcaaatcc |
33820954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University