View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3915_high_11 (Length: 235)
Name: NF3915_high_11
Description: NF3915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3915_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 48064698 - 48064609
Alignment:
| Q |
116 |
gagttaatgaacggttacttaccaactgcaatgtttgacggaaaatggatatataatggacggtgcataagttgaagggttgtttgtttg |
205 |
Q |
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| T |
48064698 |
gagttaatgaacggttacttaccaactgcaatgtttgacggaaaatggatatatagtggacggtgcataagttgaagggttgtttgtttg |
48064609 |
T |
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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48064813 - 48064777
Alignment:
| Q |
1 |
tgtgtatgagttttactaaacaagagagatttaactc |
37 |
Q |
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| T |
48064813 |
tgtgtatgagttttactaaacaagagagatttaactc |
48064777 |
T |
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