View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3915_high_2 (Length: 348)

Name: NF3915_high_2
Description: NF3915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3915_high_2
NF3915_high_2
[»] chr5 (3 HSPs)
chr5 (9-330)||(27976374-27976692)
chr5 (284-324)||(29587683-29587723)
chr5 (285-319)||(34166131-34166165)
[»] chr8 (6 HSPs)
chr8 (285-319)||(30585118-30585152)
chr8 (284-320)||(3943757-3943793)
chr8 (288-324)||(18374281-18374317)
chr8 (285-318)||(16852084-16852117)
chr8 (287-319)||(10440381-10440413)
chr8 (284-320)||(16330988-16331024)
[»] chr6 (7 HSPs)
chr6 (284-317)||(34406440-34406473)
chr6 (285-321)||(1960346-1960382)
chr6 (284-314)||(32862773-32862803)
chr6 (284-321)||(2468489-2468526)
chr6 (285-326)||(4240931-4240972)
chr6 (285-322)||(8427749-8427786)
chr6 (284-321)||(34443060-34443097)
[»] chr4 (7 HSPs)
chr4 (285-326)||(21886518-21886559)
chr4 (284-320)||(32754619-32754655)
chr4 (284-326)||(1678675-1678717)
chr4 (287-320)||(19176660-19176693)
chr4 (289-318)||(23817990-23818019)
chr4 (284-321)||(27131689-27131726)
chr4 (285-318)||(51238017-51238050)
[»] chr3 (3 HSPs)
chr3 (284-320)||(28286906-28286942)
chr3 (284-319)||(17105270-17105305)
chr3 (285-321)||(18398014-18398050)
[»] chr7 (3 HSPs)
chr7 (289-324)||(43434517-43434552)
chr7 (284-320)||(2811268-2811304)
chr7 (284-320)||(6632427-6632463)
[»] chr1 (3 HSPs)
chr1 (289-324)||(40494269-40494304)
chr1 (287-326)||(2642911-2642951)
chr1 (289-317)||(27723845-27723873)
[»] chr2 (2 HSPs)
chr2 (285-321)||(15804120-15804156)
chr2 (285-321)||(22556244-22556280)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 330
Target Start/End: Complemental strand, 27976692 - 27976374
Alignment:
Q  9 gagatgaagtatcagtatcctcctgcatgttggatccttgacctgattttctaaaaagtccttcatgtggtgtatatttgtattatgtggttgttgtgta 108  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  27976692 gagatgaagtatcagtatcct---gcatgttggatccttgacctgattttctaaaaagtgcttcatgtggtgtatatttgtattctgtggttgttgtgta 27976596  T
Q  109 tggactttcgtctggatttgtgtctggaccgtttatcttctgatttaaaaattgtatctctttgtccattgtcacaagagcattcttcatttctcttaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27976595 tggactttcgtctggatttgtgtctggaccgtttatcttctgatttaaaaattgtatctctttgtcccttgtcacaagagcattcttcatttctcttaac 27976496  T
Q  209 tacacgaacaaaaataaaattagttggagtacaaaagttttaaatatatatgtgtgtgtgactggtgttcgatatgttacattcaatcactttcattttc 308  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  27976495 tgcacaaacaaaaataaaattagttggagtacaaaagttttaaatatatatgtgtgtgtgactggtgtccgatatgttacgttcaatcactttcattttc 27976396  T
Q  309 ttaaattattaccggtattcac 330  Q
    ||||||||||||||||||||||    
T  27976395 ttaaattattaccggtattcac 27976374  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 29587723 - 29587683
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattaccggt 324  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  29587723 gttacatttaatcacttccattttcttaaattattaccggt 29587683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 34166165 - 34166131
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattatta 319  Q
    ||||||||||||| |||||||||||||||||||||    
T  34166165 ttacattcaatcaatttcattttcttaaattatta 34166131  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 30585118 - 30585152
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattatta 319  Q
    |||||||||||||||||||||||||||||||||||    
T  30585118 ttacattcaatcactttcattttcttaaattatta 30585152  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 3943793 - 3943757
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattac 320  Q
    |||||||||||||||||| ||||||||||||||||||    
T  3943793 gttacattcaatcacttttattttcttaaattattac 3943757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 18374281 - 18374317
Alignment:
Q  288 cattcaatcactttcattttcttaaattattaccggt 324  Q
    ||||||||||| |||||||||||||||||||||||||    
T  18374281 cattcaatcacattcattttcttaaattattaccggt 18374317  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 16852117 - 16852084
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattatt 318  Q
    |||||||||||||||| |||||||||||||||||    
T  16852117 ttacattcaatcacttacattttcttaaattatt 16852084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 10440413 - 10440381
Alignment:
Q  287 acattcaatcactttcattttcttaaattatta 319  Q
    ||||||||||||||| |||||||||||||||||    
T  10440413 acattcaatcacttttattttcttaaattatta 10440381  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 16331024 - 16330988
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattac 320  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  16331024 gttacatttaatcattttcattttcttaaattattac 16330988  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 34406473 - 34406440
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattat 317  Q
    ||||||||||||||||||||||||||||||||||    
T  34406473 gttacattcaatcactttcattttcttaaattat 34406440  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 1960346 - 1960382
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattattacc 321  Q
    |||||||||||||||||||||||||||||||| ||||    
T  1960346 ttacattcaatcactttcattttcttaaattactacc 1960382  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 314
Target Start/End: Original strand, 32862773 - 32862803
Alignment:
Q  284 gttacattcaatcactttcattttcttaaat 314  Q
    |||||||||||||||||||||||||||||||    
T  32862773 gttacattcaatcactttcattttcttaaat 32862803  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 2468489 - 2468526
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattacc 321  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  2468489 gttacattcaattacttccattttcttaaattattacc 2468526  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 4240931 - 4240972
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattattaccggtat 326  Q
    |||||||  |||||||||||||||||||||||||| ||||||    
T  4240931 ttacatttcatcactttcattttcttaaattattaacggtat 4240972  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 8427786 - 8427749
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattattaccg 322  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  8427786 ttacatttaatcaatttcattttcttaaattattaccg 8427749  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 34443060 - 34443097
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattacc 321  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  34443060 gttacattcaatcactttcactttctcaaattattacc 34443097  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 21886559 - 21886518
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattattaccggtat 326  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  21886559 ttacattcaatcactatcattttctcaaattattaccggtat 21886518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 32754655 - 32754619
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattac 320  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32754655 gttacattcaatcactttcattttcttaaactattac 32754619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 1678717 - 1678675
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattaccggtat 326  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||    
T  1678717 gttacatttaatcactttcattttctcaaattattagcggtat 1678675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 19176693 - 19176660
Alignment:
Q  287 acattcaatcactttcattttcttaaattattac 320  Q
    ||||||||||||||||||||||||||| ||||||    
T  19176693 acattcaatcactttcattttcttaaactattac 19176660  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 23817990 - 23818019
Alignment:
Q  289 attcaatcactttcattttcttaaattatt 318  Q
    ||||||||||||||||||||||||||||||    
T  23817990 attcaatcactttcattttcttaaattatt 23818019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 27131689 - 27131726
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattacc 321  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  27131689 gttacattcaattacttccattttcttaaattattacc 27131726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 51238017 - 51238050
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattatt 318  Q
    |||||||||||||||| |||||||||||||||||    
T  51238017 ttacattcaatcacttccattttcttaaattatt 51238050  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 28286942 - 28286906
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattac 320  Q
    |||||||||||| ||||||||||||||||||||||||    
T  28286942 gttacattcaattactttcattttcttaaattattac 28286906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 319
Target Start/End: Complemental strand, 17105305 - 17105270
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattatta 319  Q
    |||||||||||||||||| |||||||||||||||||    
T  17105305 gttacattcaatcacttttattttcttaaattatta 17105270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 18398014 - 18398050
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattattacc 321  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  18398014 ttacattcaatcacattcattttcataaattattacc 18398050  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 43434552 - 43434517
Alignment:
Q  289 attcaatcactttcattttcttaaattattaccggt 324  Q
    ||||||||||||||||||||||||||||||| ||||    
T  43434552 attcaatcactttcattttcttaaattattatcggt 43434517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 2811304 - 2811268
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattac 320  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  2811304 gttacattcaattacttttattttcttaaattattac 2811268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 6632463 - 6632427
Alignment:
Q  284 gttacattcaatcactttcattttcttaaattattac 320  Q
    |||||||||||||||||| |||||||||| |||||||    
T  6632463 gttacattcaatcacttttattttcttaatttattac 6632427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 40494269 - 40494304
Alignment:
Q  289 attcaatcactttcattttcttaaattattaccggt 324  Q
    |||||||||||||||||| |||||||||||||||||    
T  40494269 attcaatcactttcatttgcttaaattattaccggt 40494304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 2642911 - 2642951
Alignment:
Q  287 acattcaatcactttcattttc-ttaaattattaccggtat 326  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  2642911 acattcaatcactttcattttctttaaattattactggtat 2642951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 27723873 - 27723845
Alignment:
Q  289 attcaatcactttcattttcttaaattat 317  Q
    |||||||||||||||||||||||||||||    
T  27723873 attcaatcactttcattttcttaaattat 27723845  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 15804120 - 15804156
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattattacc 321  Q
    |||||||||||||||| |||||||| |||||||||||    
T  15804120 ttacattcaatcacttccattttctcaaattattacc 15804156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 22556280 - 22556244
Alignment:
Q  285 ttacattcaatcactttcattttcttaaattattacc 321  Q
    ||||||||||||||||  |||||||||||||||||||    
T  22556280 ttacattcaatcacttctattttcttaaattattacc 22556244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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