View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3915_high_4 (Length: 290)

Name: NF3915_high_4
Description: NF3915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3915_high_4
NF3915_high_4
[»] chr1 (1 HSPs)
chr1 (11-290)||(39483528-39483825)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 39483825 - 39483528
Alignment:
Q  11 agcagagacacataccatacaccatgacatattgacacgataataatttgtaaaatgacacaattcacatttgttggtgtgtaca--------tatgtcg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||    
T  39483825 agcagagacacataccatacaccatgacatattgacacgataataatttgtaaaatgacacaattcacatttgttggtgcgtacacactgacatatgtcg 39483726  T
Q  103 gacaccaaacacgtcttcga----------ccaaaggtgaaaaacatcttaagaagaagaaagagaagggtttttagtattcaatttaagttttctaatt 192  Q
     |||||| ||||||||||||          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39483725 cacaccagacacgtcttcgatgaaaagtggccaagggtgaaaaacatcttaagaagaagaaagagaagggtttttagtattcaatttaagttttctaatt 39483626  T
Q  193 ctcaaaggatcacaatccaaaccacagccacactgcggagattcaaagaaattatccaaaggaaaagccgcagaagcaacaccaacagagaaatcaag 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39483625 ctcaaaggatcacaatccaaaccacagccacactgcggagattcaaagaaatcatccaaaggaaaagccgcagaagcaacaccaacagagaaatcaag 39483528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University