View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3915_high_8 (Length: 242)
Name: NF3915_high_8
Description: NF3915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3915_high_8 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 344951 - 345176
Alignment:
| Q |
1 |
tgcaattccaaaacaagatattgccaatgagtaaaactgaggcaaaagggtcagatttcttgaatttagtgaatgaagaatgttgatggtatgatcaaat |
100 |
Q |
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| T |
344951 |
tgcatttccaaaacaagagattgccaatgagtaaaactgaggcaaaagggtcagatttcttgaatttagtgaatgaagaatgttgatgatatgatcaaat |
345050 |
T |
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| Q |
101 |
ttgcgttgttctgcatatgatttgaataatttagaaatgaaatgaagagaagggtgaaaggaactgtttaggagttgttcccatgtggtttgtgatttat |
200 |
Q |
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| T |
345051 |
ttgcgttgttctgcatatgatttgaataatttagaaatgaaatgaagagaagggtgaaaggaactgtttaggagttgttcccatgtggtttgtgatttat |
345150 |
T |
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| Q |
201 |
gaaagtaaccattttgtgtgtagtgt |
226 |
Q |
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| T |
345151 |
gaaagtaaccattttgtgtgtagtgt |
345176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 19999271 - 19999046
Alignment:
| Q |
1 |
tgcaattccaaaacaagatattgccaatgagtaaaactgaggcaaaagggtcagatttcttgaatttagtgaatgaagaatgttgatggtatgatcaaat |
100 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19999271 |
tgcatttccaaaacaagagattgccaatgagtaaaactgaggcaaaagggtcagatttcttgaatttagtgaatgaagaatgttgatgatatgatcaaat |
19999172 |
T |
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| Q |
101 |
ttgcgttgttctgcatatgatttgaataatttagaaatgaaatgaagagaagggtgaaaggaactgtttaggagttgttcccatgtggtttgtgatttat |
200 |
Q |
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| T |
19999171 |
ttgtgttgttctgcatatgatttgaataatttagaaatgaaatgaagagaagggtgaaaggaactgtttaggagttgttcccatgtggtttgtgatttat |
19999072 |
T |
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| Q |
201 |
gaaagtaaccattttgtgtgtagtgt |
226 |
Q |
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| T |
19999071 |
gaaagtaaccattttgtgtgtagtgt |
19999046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 28824094 - 28823896
Alignment:
| Q |
7 |
tccaaaacaagatattgccaatgagtaaaactgaggcaaaagggtcagatttcttgaatttagtgaatgaagaatgttgatggtatgatcaaatttgcgt |
106 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||| | | | |||||| | |
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| T |
28824094 |
tccaaaacaagagattgctaatgagtaaaattgaggcaaaagggtcaatttttttgagcttagtgaatgaagaatgttgatgatttcgttgaatttgttt |
28823995 |
T |
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| Q |
107 |
tgttctgcatatgatttgaataatttagaaatgaaatgaagagaagggtgaaaggaactgtttaggagttgttcccatgtggtttgtgatttatgaaag |
205 |
Q |
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| T |
28823994 |
tgttttgtgtaagatttgaagagttttgaaatgaaatgaagagatgggttatatgaactgtttaggagttgttcccatgtggattgtgattgatgaaag |
28823896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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