View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3915_low_3 (Length: 347)
Name: NF3915_low_3
Description: NF3915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3915_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 347
Target Start/End: Complemental strand, 27977013 - 27976676
Alignment:
| Q |
10 |
gcataggttgttgatgtttagaatgtgaatgtccttcggatttgttgttttcctttattgtccttagttctacttttaagtcctgtattgagttttgaaa |
109 |
Q |
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| T |
27977013 |
gcataggttgttgatgtttagaatgtgaatgtccttcggatttgttgttttcctttattgtccttagttctacttttaagtcttgtattgagttttgaaa |
27976914 |
T |
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| Q |
110 |
cttttgaatctgatgaactgatgtgctaaatctcagccaaaactcgagattttcctcgaggaggtcgtcaaggtctgaacggaatttcttttctaaattc |
209 |
Q |
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| T |
27976913 |
cttttgaatctgatgaactgatgtgctaaatcttagccaaaactcgagattttcctcgaggaggtcgtcaaggtctgaacggaatttcttttctaaatcc |
27976814 |
T |
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| Q |
210 |
gaaaggttttgccgcttatcttggtcagccatgagcttctcaagggttctaaggccatgggctgatgagttttcatgttggtctgcgaaagatgttctga |
309 |
Q |
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| T |
27976813 |
gaaaggttttgccgcttatcttggtcagccatgagcttctcaagggttctaaggccatgggctgatgagttttcatgttggtctgcgaaagatgttctga |
27976714 |
T |
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| Q |
310 |
tagaattgttgtcgatgtttagagatgaagtatcagta |
347 |
Q |
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| T |
27976713 |
tagaattgttgtcgatgtttagagatgaagtatcagta |
27976676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 28306709 - 28306647
Alignment:
| Q |
68 |
tgtccttagttctacttttaagtcctgtattgagttttgaaacttttgaatctgatgaactga |
130 |
Q |
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| T |
28306709 |
tgtccttagttctgaatttaagtcctaaattgagttttgaaacttttgaatctgattaactga |
28306647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 46039829 - 46039911
Alignment:
| Q |
62 |
ctttattgtccttagttctacttttaagtcctgtattgagttttgaaacttttgaatctgatgaactgatgtgctaaatctca |
144 |
Q |
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| T |
46039829 |
ctttatttttcttagttctacttttaagtcctgtaaagattgttggaacttttgaatttgatgaactgaagtgctaaacctca |
46039911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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