View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3915_low_5 (Length: 290)

Name: NF3915_low_5
Description: NF3915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3915_low_5
NF3915_low_5
[»] chr1 (1 HSPs)
chr1 (11-290)||(39483528-39483825)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 39483825 - 39483528
Alignment:
Q  11 agcagagacacataccatacaccatgacatattgacacgataataatttgtaaaatgacacaattcacatttgttggtgtgtaca--------tatgtcg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||    
T  39483825 agcagagacacataccatacaccatgacatattgacacgataataatttgtaaaatgacacaattcacatttgttggtgcgtacacactgacatatgtcg 39483726  T
Q  103 gacaccaaacacgtcttcga----------ccaaaggtgaaaaacatcttaagaagaagaaagagaagggtttttagtattcaatttaagttttctaatt 192  Q
     |||||| ||||||||||||          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39483725 cacaccagacacgtcttcgatgaaaagtggccaagggtgaaaaacatcttaagaagaagaaagagaagggtttttagtattcaatttaagttttctaatt 39483626  T
Q  193 ctcaaaggatcacaatccaaaccacagccacactgcggagattcaaagaaattatccaaaggaaaagccgcagaagcaacaccaacagagaaatcaag 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39483625 ctcaaaggatcacaatccaaaccacagccacactgcggagattcaaagaaatcatccaaaggaaaagccgcagaagcaacaccaacagagaaatcaag 39483528  T

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