View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3916_high_6 (Length: 204)
Name: NF3916_high_6
Description: NF3916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3916_high_6 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 11889440 - 11889253
Alignment:
| Q |
18 |
atgatgagtcccgtcagatgtcattggtgttttgaacaaattttcaggtttcggtccaacagtcgaccttctaccaaggtggtctactgaannnnnnnnc |
117 |
Q |
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| T |
11889440 |
atgatgagtcccgtcagatgtcattggtgttttgaacaaattttcaggtttcggtccaacagtcgaccttctatcaaggtggtctactgaattttttttc |
11889341 |
T |
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| Q |
118 |
ttctagtatttatatatgacaataacatggttctactgaatggcctatacatagatgatac-aaaaaattaaaccatataaaggtcta |
204 |
Q |
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| T |
11889340 |
ttctagtatttatatatgacaataacatggttctactgaatggcctatgcatagatgatacaaaaaaattaaaccatataaaggtcta |
11889253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 11896071 - 11895982
Alignment:
| Q |
18 |
atgatgagtcccgtcagatgtcattggtgttttgaacaaattttcaggtttcggtccaacagtcgaccttctaccaaggtggtctactgaa |
108 |
Q |
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| T |
11896071 |
atgatgagtcctgtcaaatgtcattggtgttttgaataaattttcaggttctggt-ctagagtcgaccttctatcaaggtgttctactgaa |
11895982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 11901737 - 11901648
Alignment:
| Q |
18 |
atgatgagtcccgtcagatgtcattggtgttttgaacaaattttcaggtttcggtccaacagtcgaccttctaccaaggtggtctactgaa |
108 |
Q |
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| T |
11901737 |
atgatgagtcctgtcaaatgtcattggtgttttgaataaattttcaggttctggt-ctagagtcgaccttctatcaaggtgttctactgaa |
11901648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 11895800 - 11895753
Alignment:
| Q |
155 |
gaatggcctatacatagatgatacaaaaaattaaaccatataaaggtcta |
204 |
Q |
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| T |
11895800 |
gaatggcctagacatagatgata--aaaaattaaaccatataaaggtcta |
11895753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 11901466 - 11901419
Alignment:
| Q |
155 |
gaatggcctatacatagatgatacaaaaaattaaaccatataaaggtcta |
204 |
Q |
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| T |
11901466 |
gaatggcctagacatagatgata--aaaaattaaaccatataaaggtcta |
11901419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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