View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3916_low_1 (Length: 332)
Name: NF3916_low_1
Description: NF3916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3916_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 47271773 - 47271469
Alignment:
| Q |
18 |
ttaacatcagacacggattcccttgtttttgggacaaattcacacggttctcatcttgatgatccgtgtgcatgttcatactaaatgacaattacaaatc |
117 |
Q |
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| T |
47271773 |
ttaacatcagacacggattcccttgtttttgggacaaattcacacggttctcatcttgatgatccgtgtgcatgttcatactaaatgacaattacaaatc |
47271674 |
T |
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| Q |
118 |
atagctttctcaaaagttgaacatgcttacgaccaattcatgcaagaatttgtgtttaaaagaaaaaactttctccacaagattactaaaagcagaattt |
217 |
Q |
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| T |
47271673 |
atagctttctcaaaagttgaacatgcttacgaccaattcatgcaagaatttgtgtttaaaagaaaaaactttctccacaagattactaaaagcagaattt |
47271574 |
T |
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| Q |
218 |
ataatgatcttaattcttaaacatgttgttcgattctttatctgcattgtataaaccgccatcgatcgatatctttcatcttagccttcactcacgtcac |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47271573 |
ataatgatcttaattcttaaacatgttgtttgattctttatctgcattgtataaaccgccatcgatcgatatctttcatcttagccttcactcacgtcac |
47271474 |
T |
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| Q |
318 |
ctttg |
322 |
Q |
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||||| |
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| T |
47271473 |
ctttg |
47271469 |
T |
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