View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3916_low_2 (Length: 283)
Name: NF3916_low_2
Description: NF3916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3916_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 38138889 - 38139160
Alignment:
| Q |
1 |
aagtctttaacaactctactttgaaccgaggctaaactatatatagtatgagaatcatactctaatgccataagcaagaccttgaattccaacagtggct |
100 |
Q |
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| T |
38138889 |
aagtctttaacaactctactttgaaccgaggctaaactata--tagtatgagaatcataccataatgccataagcaagaccttgaattccaacagtggct |
38138986 |
T |
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| Q |
101 |
atggatgctccagaaagctttagagatcctaaatgtccacaaaatatcatggtcacaaagcttagcataaaattgcaaaggtagaaaataatggaagcac |
200 |
Q |
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| T |
38138987 |
atggatgctccagcaagctttagagatcctaaatgtccacaaaatatcatggtcacaaagcttagcataaaattgcaaaggtagaaaataatggaagcac |
38139086 |
T |
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| Q |
201 |
cagagagaatccataggagccatgactcccaagcaacaagtttaagccaccatctcaactcaataggcctatgct |
275 |
Q |
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| T |
38139087 |
ca-agagaatccataggagccatgactcccaagcaacaagtttaagccaccatctcaactcaacaggcctatgct |
38139160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 39315545 - 39315281
Alignment:
| Q |
7 |
ttaacaactctactttgaaccgaggctaaactatatatagtatgagaatcatactctaatgccataagcaagaccttgaattccaacagtggctatggat |
106 |
Q |
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| T |
39315545 |
ttaacaattctactttgaactgagggtaaagtagata--gcatgagaatcataccataatgccataagcaagaccttgaattccaacactggctatggat |
39315448 |
T |
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| Q |
107 |
gctccagaaagctttagagatcctaaatgtccacaaaatatcatggtcacaaagcttagcataaaattgcaaaggtagaaaataatggaagcaccagaga |
206 |
Q |
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| T |
39315447 |
gctccagcaagctctagagatcctaaatgtccacaaaacatcatggtcacaaagcttaacataaaattgcaaaggtagacaacaatagaagcaccagaaa |
39315348 |
T |
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| Q |
207 |
gaatccataggagccatgactcccaagcaacaagtttaagccaccatctcaactcaataggcctatg |
273 |
Q |
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| T |
39315347 |
ggatccataggagtcttgactcccaagcaacaagtttaagccaccatctcaacccaataggcctatg |
39315281 |
T |
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