View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3916_low_3 (Length: 249)
Name: NF3916_low_3
Description: NF3916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3916_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 28420867 - 28421037
Alignment:
| Q |
19 |
taccaattcttttagctatgggcaatcctcttaaaagaaatatggtagtatcttcaagatcaatgtttgttaagatcaattgagaatcaattagtccatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28420867 |
taccaattcttttagctatgggcaatcctcttaaaagaaatatggtagtatcttcaagatcaatgtttgttaagatcaattgagaatcaattagtc---- |
28420962 |
T |
|
| Q |
119 |
gattgatttgttttcgattgtaccacaatctagctgaatcctattgaactaaggttgaacgacatctaattcaatt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28420963 |
-attgatttgttttcgattgtaccacaatctagctgaatccgattgaactaaggttgaacgacatctaattcaatt |
28421037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University