View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3916_low_5 (Length: 227)
Name: NF3916_low_5
Description: NF3916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3916_low_5 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 42902979 - 42902745
Alignment:
| Q |
8 |
ttaacttaattgatgaagatatatgctaactattttaaccatttcatag---------------gctgaagataaaatatccagcttcgtaaagttcatg |
92 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42902979 |
ttaacttaattgatgaagatatatgctagctattttaaccatttcatagccaatgcacgttcaagctgaagataaaatatccagcttcgtaaagttcatg |
42902880 |
T |
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| Q |
93 |
ttgaagtggtactgaggcgcgagattttaattgcaaacactaaaccaaaccggtttgtagtgtatgtttgaaatcatcttgagttgtgctgtgctggccg |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42902879 |
ttgaagtggtactgaggcgcgagattttaattgcaaacactaaaccaaaccggtgtgtagtgtatgtttgaaatcatcttgagttgtgctgtgctggccg |
42902780 |
T |
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| Q |
193 |
gtgtcatttttaccaataaaattaatttgacaaaa |
227 |
Q |
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| T |
42902779 |
gtagcatttttaccaataaaattaatttgacaaaa |
42902745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 1906 - 2120
Alignment:
| Q |
8 |
ttaacttaattgatgaagatatatgctaactattttaaccatttcatag---------------gctgaagataaaatatccagcttcgtaaagttcatg |
92 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1906 |
ttaacttaattgatgaagatatatgctagctattttaaccatttcatagccaatgcacgttcaagctgaagataaaatatccagcttcgtaaagttcatg |
2005 |
T |
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| Q |
93 |
ttgaagtggtactgaggcgcgagattttaattgcaaacactaaaccaaac-cggtttgtagtgtatgtttgaaatcatcttgagttgtgctgtgctggcc |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2006 |
ttgaagtggtactgaggcgcgagattttaattgcaaacactaaaccaaacncggtgtgtagtgtatgtttgaaatcatcttgagttgtgctgtgctggcc |
2105 |
T |
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| Q |
192 |
ggtgtcatttttacc |
206 |
Q |
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||| |||||||||| |
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| T |
2106 |
ggtagcatttttacc |
2120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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