View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3917_high_1 (Length: 631)

Name: NF3917_high_1
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3917_high_1
NF3917_high_1
[»] chr2 (11 HSPs)
chr2 (19-621)||(10546918-10547520)
chr2 (542-621)||(10508971-10509050)
chr2 (536-621)||(10464766-10464851)
chr2 (546-621)||(10476044-10476119)
chr2 (543-621)||(10494363-10494441)
chr2 (542-621)||(7478921-7479000)
chr2 (293-326)||(44460357-44460390)
chr2 (296-326)||(12749993-12750023)
chr2 (185-222)||(10864728-10864765)
chr2 (293-326)||(29324184-29324217)
chr2 (545-621)||(10519641-10519717)
[»] chr7 (7 HSPs)
chr7 (349-408)||(96784-96843)
chr7 (353-405)||(5363792-5363844)
chr7 (293-333)||(38622874-38622914)
chr7 (295-333)||(40869549-40869587)
chr7 (294-323)||(1109354-1109383)
chr7 (294-326)||(8095919-8095951)
chr7 (294-326)||(28613246-28613278)
[»] chr5 (6 HSPs)
chr5 (293-335)||(4787938-4787980)
chr5 (293-331)||(41399567-41399605)
chr5 (294-338)||(10389957-10390001)
chr5 (293-339)||(875722-875767)
chr5 (293-326)||(38346888-38346921)
chr5 (293-325)||(35713287-35713319)
[»] chr6 (4 HSPs)
chr6 (293-326)||(21869889-21869922)
chr6 (295-336)||(4354335-4354376)
chr6 (293-326)||(31694724-31694757)
chr6 (300-340)||(4381972-4382012)
[»] chr4 (6 HSPs)
chr4 (294-327)||(2843582-2843615)
chr4 (296-333)||(18968304-18968341)
chr4 (297-333)||(20989522-20989558)
chr4 (293-333)||(34581605-34581645)
chr4 (351-405)||(26275458-26275512)
chr4 (349-393)||(4762195-4762239)
[»] chr8 (5 HSPs)
chr8 (295-338)||(31809797-31809840)
chr8 (300-339)||(33120549-33120588)
chr8 (357-408)||(34862995-34863046)
chr8 (293-339)||(22807094-22807140)
chr8 (294-326)||(16950282-16950314)
[»] chr3 (7 HSPs)
chr3 (294-333)||(2101653-2101692)
chr3 (294-331)||(21754265-21754302)
chr3 (355-408)||(34363313-34363366)
chr3 (294-326)||(2990984-2991016)
chr3 (293-333)||(25519479-25519519)
chr3 (293-325)||(27016927-27016959)
chr3 (298-326)||(34363254-34363282)
[»] scaffold0041 (1 HSPs)
scaffold0041 (295-333)||(96695-96733)
[»] scaffold0913 (1 HSPs)
scaffold0913 (293-326)||(1280-1313)
[»] scaffold0898 (1 HSPs)
scaffold0898 (293-326)||(4288-4321)
[»] chr1 (5 HSPs)
chr1 (293-326)||(15955919-15955952)
chr1 (293-333)||(1295235-1295275)
chr1 (294-326)||(15190895-15190927)
chr1 (357-405)||(19392292-19392340)
chr1 (298-326)||(32721452-32721480)
[»] scaffold0245 (1 HSPs)
scaffold0245 (293-333)||(23145-23185)


Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 621
Target Start/End: Complemental strand, 10547520 - 10546918
Alignment:
Q  19 atacactggtcagatcgaaaagatggaggaggctagaaataaaattcagaggagagatgcgagacttaggtgggatattcatgaagagcaatggctcaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10547520 atacactggtcagatcgaaaagatggaggaggctagaaataaaattcagagaagagatgcgagactttggtgggatattcatgaagagcaatggctcaat 10547421  T
Q  119 tttagttatcgtcggagttccacaagaaaaagttcatatcctactcagatatgtgattctttccctgcagatgtcactttcttcaactggaaacaccata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10547420 tttagttatcgtcggagttccacaagaaaaagttcatatcctactcagatatgtgattctttccctgcagatgttactttcttcaactggaaacaccata 10547321  T
Q  219 aggtttcaattttcattttcaacgactcaattcatttttgcattttattatatgataggataccaatccgccattgatacactatttagtacaaaatgtt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10547320 aggtttcaattttcattttcaacgactcaattcatttttgcattttattatatgataggataccaatccgctattgatacactatttagtacaaaatgtt 10547221  T
Q  319 gtcaaatatcggctacagtggcagcactattattgcgtagcggaattttaacaattagctattttctgctatctgtgattgacaacattgtgtgcataaa 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  10547220 gtcaaatatcggctacagtggcagcactattattgcgtagcggaatttgaacaattagctattttctgctatctgtgattgacaacat--tgtgcataaa 10547123  T
Q  419 aaagtcaaaaatattcttcttgcttgcatgcattatcgatggaatggtagtaaactgatatgatatattcttgaagcattcagttaatg-nnnnnnnnnn 517  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  10547122 aaagtcaaaattattcttcttgctttcatgctttatcgatggaatggtagtaaactgatatgatatattcttgaagcattcagttaatgtttttttatat 10547023  T
Q  518 nnnnnactttctttaaaattgtcggtcc-ttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgc 616  Q
         |||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10547022 tttttactttctttaaaattgtccgtccgttgcagatgagcgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctacgtgc 10546923  T
Q  617 ctttg 621  Q
    |||||    
T  10546922 ctttg 10546918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 542 - 621
Target Start/End: Complemental strand, 10509050 - 10508971
Alignment:
Q  542 gtccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 621  Q
    ||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||    
T  10509050 gtccttgcagatgagcgtaattgacacacctgcttgtgttgatttcactcctgaggttgacaatgctctgcgtgcctttg 10508971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 536 - 621
Target Start/End: Complemental strand, 10464851 - 10464766
Alignment:
Q  536 ttgtcggtccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 621  Q
    ||||| |||||||||||||| |||||||||||||||||||  |||||| |||||| |||||||| | ||||| |||||||||||||    
T  10464851 ttgtctgtccttgcagatgactgtaattgacacacctgatcatgttgatttcactcctgaggttcagaatgcgctgcgtgcctttg 10464766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 621
Target Start/End: Complemental strand, 10476119 - 10476044
Alignment:
Q  546 ttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 621  Q
    ||||||||||||||  ||||||||||||||  |||||| |||||| |||||||| | |||||||||||||||||||    
T  10476119 ttgcagatgagtgtgcttgacacacctgataatgttgatttcactgctgaggttcagaatgctctgcgtgcctttg 10476044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 621
Target Start/End: Complemental strand, 10494441 - 10494363
Alignment:
Q  543 tccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 621  Q
    |||||||||||||  || ||||||||||||| | ||||||| |||||| |||||||| | ||||||||| |||||||||    
T  10494441 tccttgcagatgaccgtgattgacacacctgctcgtgttgatttcactactgaggttaagaatgctctgtgtgcctttg 10494363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 621
Target Start/End: Original strand, 7478921 - 7479000
Alignment:
Q  542 gtccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 621  Q
    |||||||||||||| ||| ||||||||||||| |  |||||| |||||| |||||||| | | |||||||| ||||||||    
T  7478921 gtccttgcagatgactgtgattgacacacctgttcatgttgatttcactgctgaggttaagagtgctctgcctgcctttg 7479000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 44460357 - 44460390
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaata 326  Q
    ||||||||||||||||||||||||||||||||||    
T  44460357 tgatacactatttagtacaaaatgttgtcaaata 44460390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 326
Target Start/End: Original strand, 12749993 - 12750023
Alignment:
Q  296 tacactatttagtacaaaatgttgtcaaata 326  Q
    |||||||||||||||||||||||||||||||    
T  12749993 tacactatttagtacaaaatgttgtcaaata 12750023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 10864765 - 10864728
Alignment:
Q  185 gcagatgtcactttcttcaactggaaacaccataaggt 222  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  10864765 gcaggtgtcactttctttaactggaaacaccataaggt 10864728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 29324184 - 29324217
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaata 326  Q
    ||||||||||||||||||||||| ||||||||||    
T  29324184 tgatacactatttagtacaaaatattgtcaaata 29324217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 621
Target Start/End: Complemental strand, 10519717 - 10519641
Alignment:
Q  545 cttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 621  Q
    ||||||||||||  |||| |||||| || ||||| |||| ||||| ||||| ||| | ||||||||| |||||||||    
T  10519717 cttgcagatgagcataatggacacaactaattgttttgatttcacctctgaagttaagaatgctctgggtgcctttg 10519641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 96843 - 96784
Alignment:
Q  349 tattgcgtagcggaattttaacaattagctattttctgctatctgtgattgacaacattg 408  Q
    |||||||||||||||||||||||||  ||||||||||||||||  |||||||||| ||||    
T  96843 tattgcgtagcggaattttaacaatacgctattttctgctatccttgattgacaatattg 96784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 5363792 - 5363844
Alignment:
Q  353 gcgtagcggaattttaacaattagctattttctgctatctgtgattgacaaca 405  Q
    |||||| ||||||||||||| |||||||||||||||| |||| |||| |||||    
T  5363792 gcgtagtggaattttaacaaatagctattttctgctaactgtaattgtcaaca 5363844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 38622914 - 38622874
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaatatcggcta 333  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  38622914 tgatacactatttagcacaaaatgttgtcaaatagcggcta 38622874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 40869587 - 40869549
Alignment:
Q  295 atacactatttagtacaaaatgttgtcaaatatcggcta 333  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  40869587 atacagtatttagtacaaaatgttgtcaaatagcggcta 40869549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 1109383 - 1109354
Alignment:
Q  294 gatacactatttagtacaaaatgttgtcaa 323  Q
    ||||||||||||||||||||||||||||||    
T  1109383 gatacactatttagtacaaaatgttgtcaa 1109354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 8095919 - 8095951
Alignment:
Q  294 gatacactatttagtacaaaatgttgtcaaata 326  Q
    |||||||||||||||||||||||||||| ||||    
T  8095919 gatacactatttagtacaaaatgttgtcgaata 8095951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 28613278 - 28613246
Alignment:
Q  294 gatacactatttagtacaaaatgttgtcaaata 326  Q
    |||||||||| ||||||||||||||||||||||    
T  28613278 gatacactatatagtacaaaatgttgtcaaata 28613246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 4787938 - 4787980
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaatatcggctaca 335  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  4787938 tgatacactatttagtacaaaatgttgtcaaatagtggctaca 4787980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 41399605 - 41399567
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaatatcggc 331  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  41399605 tgatacactatttagtacaaaatgttgtcaaatagcggc 41399567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 10390001 - 10389957
Alignment:
Q  294 gatacactatttagtacaaaatgttgtcaaatatcggctacagtg 338  Q
    ||||||||||||| |||||||||||||||| ||||||||| ||||    
T  10390001 gatacactatttattacaaaatgttgtcaagtatcggctatagtg 10389957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 875722 - 875767
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaatatcggctacagtgg 339  Q
    |||||||||||||||| ||||||||||||||||| |||||| |||||    
T  875722 tgatacactatttagt-caaaatgttgtcaaatagcggctatagtgg 875767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 38346888 - 38346921
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaata 326  Q
    |||||||||||||| |||||||||||||||||||    
T  38346888 tgatacactatttactacaaaatgttgtcaaata 38346921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 35713287 - 35713319
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaat 325  Q
    |||||| ||||||||||||||||||||||||||    
T  35713287 tgatacgctatttagtacaaaatgttgtcaaat 35713319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 21869889 - 21869922
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaata 326  Q
    ||||||||||||||||||||||||||||||||||    
T  21869889 tgatacactatttagtacaaaatgttgtcaaata 21869922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 4354376 - 4354335
Alignment:
Q  295 atacactatttagtacaaaatgttgtcaaatatcggctacag 336  Q
    |||||||||||||||||||||||||| ||||| | |||||||    
T  4354376 atacactatttagtacaaaatgttgtaaaatagcagctacag 4354335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 31694757 - 31694724
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaata 326  Q
    |||||||||||||||||||||||||| |||||||    
T  31694757 tgatacactatttagtacaaaatgttttcaaata 31694724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 4382012 - 4381972
Alignment:
Q  300 ctatttagtacaaaatgttgtcaaatatcggctacagtggc 340  Q
    |||||||||||||||||||||||||||  ||||| ||||||    
T  4382012 ctatttagtacaaaatgttgtcaaataaaggctatagtggc 4381972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 327
Target Start/End: Complemental strand, 2843615 - 2843582
Alignment:
Q  294 gatacactatttagtacaaaatgttgtcaaatat 327  Q
    ||||||||||||||||||||||||||||||||||    
T  2843615 gatacactatttagtacaaaatgttgtcaaatat 2843582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 18968304 - 18968341
Alignment:
Q  296 tacactatttagtacaaaatgttgtcaaatatcggcta 333  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  18968304 tacactatttagtacaaaatgttgtcaaatagcggcta 18968341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 20989522 - 20989558
Alignment:
Q  297 acactatttagtacaaaatgttgtcaaatatcggcta 333  Q
    |||||||||||||||||||||||||||||| ||||||    
T  20989522 acactatttagtacaaaatgttgtcaaatagcggcta 20989558  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 34581605 - 34581645
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaatatcggcta 333  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  34581605 tgatacgctatttagtacaaaatgttgtcaaatagcggcta 34581645  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 405
Target Start/End: Complemental strand, 26275512 - 26275458
Alignment:
Q  351 ttgcgtagcggaattttaacaattagctattttctgctatctgtgattgacaaca 405  Q
    |||| ||||||||||| ||||| | |||||||||||| |||||| ||||||||||    
T  26275512 ttgcatagcggaatttgaacaaatcgctattttctgcgatctgtaattgacaaca 26275458  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 4762195 - 4762239
Alignment:
Q  349 tattgcgtagcggaattttaacaattagctattttctgctatctg 393  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||    
T  4762195 tattgcgtagcggaattttaacaattcactattttccactatctg 4762239  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 31809797 - 31809840
Alignment:
Q  295 atacactatttagtacaaaatgttgtcaaatatcggctacagtg 338  Q
    |||| ||||||||||||||||||||||||||| | |||||||||    
T  31809797 atacgctatttagtacaaaatgttgtcaaataactgctacagtg 31809840  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 33120588 - 33120549
Alignment:
Q  300 ctatttagtacaaaatgttgtcaaatatcggctacagtgg 339  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  33120588 ctatttagtacaaaatgttgtcaaatagcggcttcagtgg 33120549  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 34862995 - 34863046
Alignment:
Q  357 agcggaattttaacaattagctattttctgctatctgtgattgacaacattg 408  Q
    |||||||||||||||||  ||| ||||||||||||  |||||||||||||||    
T  34862995 agcggaattttaacaatctgctgttttctgctatccttgattgacaacattg 34863046  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 22807140 - 22807094
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaatatcggctacagtgg 339  Q
    |||||||||||||||||| |||||||||||||||  |||||| ||||    
T  22807140 tgatacactatttagtacgaaatgttgtcaaataatggctactgtgg 22807094  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 16950282 - 16950314
Alignment:
Q  294 gatacactatttagtacaaaatgttgtcaaata 326  Q
    |||||| ||||||||||||||||||||||||||    
T  16950282 gatacattatttagtacaaaatgttgtcaaata 16950314  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 333
Target Start/End: Complemental strand, 2101692 - 2101653
Alignment:
Q  294 gatacactatttagtacaaaatgttgtcaaatatcggcta 333  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  2101692 gatacactatttagtacaaagtgttgtcaaataacggcta 2101653  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 21754265 - 21754302
Alignment:
Q  294 gatacactatttagtacaaaatgttgtcaaatatcggc 331  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  21754265 gatacactatttagtacaaattgttgtcaaatagcggc 21754302  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 34363313 - 34363366
Alignment:
Q  355 gtagcggaattttaacaattagctattttctgctatctgtgattgacaacattg 408  Q
    ||||| || ||||||||||  ||||||||| ||||||||||||||||| |||||    
T  34363313 gtagcagatttttaacaatctgctattttccgctatctgtgattgacatcattg 34363366  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 2991016 - 2990984
Alignment:
Q  294 gatacactatttagtacaaaatgttgtcaaata 326  Q
    ||||| |||||||||||||||||||||||||||    
T  2991016 gatacgctatttagtacaaaatgttgtcaaata 2990984  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 25519519 - 25519479
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaatatcggcta 333  Q
    |||||||| |||||||||||| |||||||||||| ||||||    
T  25519519 tgatacacgatttagtacaaattgttgtcaaatagcggcta 25519479  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 27016959 - 27016927
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaat 325  Q
    ||||| |||||||||||||||||||||||||||    
T  27016959 tgatatactatttagtacaaaatgttgtcaaat 27016927  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 34363254 - 34363282
Alignment:
Q  298 cactatttagtacaaaatgttgtcaaata 326  Q
    |||||||||||||||||||||||||||||    
T  34363254 cactatttagtacaaaatgttgtcaaata 34363282  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 96695 - 96733
Alignment:
Q  295 atacactatttagtacaaaatgttgtcaaatatcggcta 333  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  96695 atacagtatttagtacaaaatgttgtcaaatagcggcta 96733  T

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Target: scaffold0913 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 1313 - 1280
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaata 326  Q
    ||||||||||||||||||||| ||||||||||||    
T  1313 tgatacactatttagtacaaagtgttgtcaaata 1280  T

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Target: scaffold0898 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 4288 - 4321
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaata 326  Q
    ||||||||||||||||||||| ||||||||||||    
T  4288 tgatacactatttagtacaaagtgttgtcaaata 4321  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 15955919 - 15955952
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaata 326  Q
    ||||||||||||||| ||||||||||||||||||    
T  15955919 tgatacactatttaggacaaaatgttgtcaaata 15955952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 1295235 - 1295275
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaatatcggcta 333  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  1295235 tgatacactatttggtacaaagtgttgtcaaataacggcta 1295275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 15190895 - 15190927
Alignment:
Q  294 gatacactatttagtacaaaatgttgtcaaata 326  Q
    ||||||||||| |||||||||||||||||||||    
T  15190895 gatacactattcagtacaaaatgttgtcaaata 15190927  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 19392292 - 19392340
Alignment:
Q  357 agcggaattttaacaattagctattttctgctatctgtgattgacaaca 405  Q
    |||||||||||||||||  ||||||| |||||||||||| |||| ||||    
T  19392292 agcggaattttaacaatacgctatttactgctatctgtgtttgaaaaca 19392340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 32721452 - 32721480
Alignment:
Q  298 cactatttagtacaaaatgttgtcaaata 326  Q
    |||||||||||||||||||||||||||||    
T  32721452 cactatttagtacaaaatgttgtcaaata 32721480  T

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Target: scaffold0245 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 23145 - 23185
Alignment:
Q  293 tgatacactatttagtacaaaatgttgtcaaatatcggcta 333  Q
    ||||||||||||| ||||||| |||||||||||| ||||||    
T  23145 tgatacactatttggtacaaagtgttgtcaaataacggcta 23185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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