View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3917_high_4 (Length: 420)
Name: NF3917_high_4
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3917_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 4537437 - 4537186
Alignment:
| Q |
5 |
ttagaattatttcaaaggtaacaactacttgagtcttaaaggaagggattgtctagccatactaaaatcatgattaatataagcaaa-taaatttttata |
103 |
Q |
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| T |
4537437 |
ttagaattatttcaaaggtaacaactacttgagtcttaaagaaagggattgtctagccatactaaaatcatgattaatataagcaaaatcaatttttata |
4537338 |
T |
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| Q |
104 |
cagttcctacga-----ggatcgtccaaaagtaaggacagtcccttatttacaatctcatcttttggtacttaacaaattgccacttcatgatttgttac |
198 |
Q |
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| T |
4537337 |
cggttcctacaaatcaagggtcgtccaaaagtaaggacaatcccttatttacaatctcatcttttggtacttaacaaattgccacttcatgatttgttac |
4537238 |
T |
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| Q |
199 |
ttttaagtcttacattgccttggtgaccctgcctataccaaaacatgtgata |
250 |
Q |
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| T |
4537237 |
ttttaagtcttacattgccttggtgaccctacccataccaaaacatgtgata |
4537186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 256 - 402
Target Start/End: Complemental strand, 4536859 - 4536707
Alignment:
| Q |
256 |
ttgtaatatttccaaatctaaggcttaaatg------tagatttgttactcctacttttttctagcacatgagtagtgagttgtgaccgtatgtttgcaa |
349 |
Q |
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| T |
4536859 |
ttgtaatatttccaaatctaaggcttaaatgattttgtacatttgttactcctatttttttctagtacatgagtagtgagttgtgaccgtatgtttgcaa |
4536760 |
T |
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| Q |
350 |
gagatcacacaataatgcctatgcataagtgagggcaattcaattggggtaac |
402 |
Q |
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| T |
4536759 |
gagatcacacaataatgcctatggataagtgagggcaattcaattggggtaac |
4536707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 52084255 - 52084050
Alignment:
| Q |
5 |
ttagaattatttcaaaggtaacaactacttgagtcttaaaggaagggattgtctagccatactaaaatcatgattaatataagcaaa-taaatttttata |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||| | ||||||| |
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| T |
52084255 |
ttagaattatttcaaaggtaacaatgacttgagtcttaaagaaagg-attgtctagccatgctaaaatcatgattcgtataagcaaaatcaatttttg-- |
52084159 |
T |
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| Q |
104 |
cagttc--cta--cgaggatcgtccaaaagtaaggacag----tcccttatttacaatctcatcttttggtacttaacaaattgccacttcatgatttgt |
195 |
Q |
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| T |
52084158 |
cggttctacaaatcaagggtcgtccaaaagtaaggtcagacaatcccttatttacaatctcatcttttggtacataacaaattgcctcttcatgatttgt |
52084059 |
T |
|
| Q |
196 |
tacttttaa |
204 |
Q |
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|||| |||| |
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| T |
52084058 |
tactcttaa |
52084050 |
T |
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