View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3917_high_6 (Length: 322)

Name: NF3917_high_6
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3917_high_6
NF3917_high_6
[»] chr2 (1 HSPs)
chr2 (37-322)||(13114075-13114360)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 37 - 322
Target Start/End: Original strand, 13114075 - 13114360
Alignment:
Q  37 attggtgtgccaaagatcaaaattggtgatggtgaaacacaaaaaactactcatccaagaatgccaccaagttccttaattcctttaccgggaaggaatc 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13114075 attggtgtgccaaagatcaaaattggtgatggtgaaacacaaaaaactactcatccaagaatgccaccaagttccttaattcctttaccgggaaggaatc 13114174  T
Q  137 gatataatagctactacagctccaataggagttggaggcaaatgttcaataaattagggcagaacaacggcaactcgaacggggcgaatgagcaatcgac 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13114175 gatataatagctactacagctccaataggagttggaggcaaatgttcaataaattagggcagaacaacggcaactcgaacggggcgaatgaacaatcgac 13114274  T
Q  237 tttgaagacttgaaagctcactcaaaaggaagagtaaaactttagtcatgaataattgatgttgccttaaatatagttcattatgc 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13114275 tttgaagacttgaaagctcactcaaaaggaagagtaaaactttagtcatgaataattgatgttgccttaaatatagtttattatgc 13114360  T

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