View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3917_low_1 (Length: 693)
Name: NF3917_low_1
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3917_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 5822825 - 5823270
Alignment:
| Q |
18 |
attttcttatatcatgtattggtcttgggaagtaannnnnnnnn-attctcattgactttgacaaatgtatgtgatgatggtaaataaaatagtagcatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5822825 |
attttcttatatcatgtattggtcttgggaagtaaatttttttttattctcattgactttgacaaatgtatgtgatgatggtaaataaaatagt-gcatt |
5822923 |
T |
|
| Q |
117 |
aacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822924 |
aacaaacaattgttaccttctccagcagccaaattaaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtga |
5823023 |
T |
|
| Q |
217 |
agtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5823024 |
agtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttctacacattcgtctgtctctatgtatgctgctattct |
5823123 |
T |
|
| Q |
317 |
ctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattcttctcagtctccaacaaacatctctttccagatgtagctactgag |
416 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5823124 |
ctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattcttctcagtctccaacaaacatctctttccagatgaagctactgag |
5823223 |
T |
|
| Q |
417 |
aaagcacacacttcctttggcaagtcctcacacaccatcatagctac |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823224 |
aaagcacacacttcctttggcaagtcctcacacaccatcatagctac |
5823270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 5829054 - 5828607
Alignment:
| Q |
18 |
attttcttatatcatgtattggtcttgggaagtaannnnnnnnn---attctcattgactttgacaaatgtatgtgatgatggtaaataaaatagtagca |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5829054 |
attttcttatatcatgtatttgtcttgggaagtaaaatattttttttattcacattgactttgacaaatgtatgtgatgatggtaaataaaatagt-gca |
5828956 |
T |
|
| Q |
115 |
ttaacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgt |
214 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5828955 |
ttaacaaacaagtcttaccttctccagcagccaaattaaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgt |
5828856 |
T |
|
| Q |
215 |
gaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctatt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5828855 |
gaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtatgctgctatt |
5828756 |
T |
|
| Q |
315 |
ctctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattcttctcagtctccaacaaacatctctttccagatgtagctactg |
414 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
5828755 |
ctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattcttctcagtctccaacaaacatctctttcctgatgaagctactg |
5828656 |
T |
|
| Q |
415 |
agaaagcacacacttcctttggcaagtcctcacacaccatcatagctac |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5828655 |
agaaagcacacacttcctttggcaagtcctcacataccatcatagctac |
5828607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 129 - 454
Target Start/End: Original strand, 5832814 - 5833139
Alignment:
| Q |
129 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
228 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||| || || ||||| | |||||| ||| || ||||| |||| ||||| | ||||||| |
|
|
| T |
5832814 |
ttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagtttgccggtgaattgtggctcaa |
5832913 |
T |
|
| Q |
229 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
5832914 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataac |
5833013 |
T |
|
| Q |
329 |
ttcagatgttcgacattgatactcggtttcaccattgatattcttctcagtctccaacaaacatctctttccagatgtagctactgagaaagcacacact |
428 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| | |||| ||||||||||||||||||||| || |||| |||||||||||||| ||||||| |
|
|
| T |
5833014 |
ttcagatgttctacattgatactcaatttcaccattgacacctttctgagtctccaacaaacatctcttccctgatgaagctactgagaaagtacacact |
5833113 |
T |
|
| Q |
429 |
tcctttggcaagtcctcacacaccat |
454 |
Q |
| |
|
|||||||| ||||||||||| ||||| |
|
|
| T |
5833114 |
tcctttggtaagtcctcacataccat |
5833139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 580 - 680
Target Start/End: Original strand, 5823383 - 5823480
Alignment:
| Q |
580 |
gtatgcataccaaaagatgtatggatgagaaaagaagaaagtaacaaaacaaaagccaataattttattgagaaagacatggttctacgtaaaagtataa |
679 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5823383 |
gtatgcataccaaaagatgtatggatgagaaaagaagagagtaacaaaatcaaaggc---aattttgttgagaaagacatggttctacgtaaaagtataa |
5823479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 585 - 673
Target Start/End: Complemental strand, 5828466 - 5828381
Alignment:
| Q |
585 |
cataccaaaagatgtatggatgagaaaagaagaaagtaacaaaacaaaagccaataattttattgagaaagacatggttctacgtaaaa |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||| |||||| |
|
|
| T |
5828466 |
cataccaaaagatgtatggatgagaaaagaagaaagtaacaaaaccaaaggc---aatttggttgagaaagacatggttctatgtaaaa |
5828381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 585 - 629
Target Start/End: Original strand, 5833260 - 5833304
Alignment:
| Q |
585 |
cataccaaaagatgtatggatgagaaaagaagaaagtaacaaaac |
629 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
5833260 |
catacctaaagaagcatggatgagaaaagaagaaagtaataaaac |
5833304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 129 - 451
Target Start/End: Original strand, 24038434 - 24038756
Alignment:
| Q |
129 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
228 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||| || || | ||||||||| |||||||| ||| |||||| | ||||||| |
|
|
| T |
24038434 |
ttaccttccccagcagccaaattgaagtaaaggtcaacaatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaa |
24038533 |
T |
|
| Q |
229 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
328 |
Q |
| |
|
|| ||||| || ||||| || ||| || | || ||||| |||||||||| ||||||||| ||||||||||||||| | || |||| ||||| || || |
|
|
| T |
24038534 |
gcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacacattgatctgtctctatgtatcccgccattcgctccaacactac |
24038633 |
T |
|
| Q |
329 |
ttcagatgttcgacattgatactcggtttcaccattgatattcttctcagtctccaacaaacatctctttccagatgtagctactgagaaagcacacact |
428 |
Q |
| |
|
||| ||||| | ||||||||||||| | |||||| | |||||| |||||||||||||| | ||||| || | ||||| |||||||| ||| | |
|
|
| T |
24038634 |
ttctgatgtcctacattgatactcgatgccaccatctgcagccttctctgtctccaacaaacaccgttttcccgaagaagctattgagaaagaacataga |
24038733 |
T |
|
| Q |
429 |
tcctttggcaagtcctcacacac |
451 |
Q |
| |
|
|||||| |||| ||||||||||| |
|
|
| T |
24038734 |
tccttttgcaattcctcacacac |
24038756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University