View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3917_low_12 (Length: 250)
Name: NF3917_low_12
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3917_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 4537488 - 4537729
Alignment:
| Q |
1 |
tattaaattataagtaattttgatatggattcaagaaattacgctatgttatatatcaaacttgttatatgacta-aaacattcatacataaattcattt |
99 |
Q |
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| T |
4537488 |
tattaaattataagttattttgatatggattcaagaaattacgttatgttataaatcaaacttgttatatgactgcaaacattcatacataaattcattt |
4537587 |
T |
|
| Q |
100 |
cattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacactaaatttcttttactc |
199 |
Q |
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| T |
4537588 |
cattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtccaataaacactaaatttcttttactc |
4537687 |
T |
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| Q |
200 |
aatcaccaaaatctataaactcgggtacttcccatcctatgc |
241 |
Q |
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| T |
4537688 |
aatcaccaaaatctatcaactcaggtacttcccatcctatgc |
4537729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 33648774 - 33648724
Alignment:
| Q |
123 |
atcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtc |
173 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||| |||||| |
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| T |
33648774 |
atcaattttacaaaacagaatttacaaaatcacgattaacaaatgttcgtc |
33648724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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