View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3917_low_16 (Length: 235)
Name: NF3917_low_16
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3917_low_16 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 54395899 - 54395679
Alignment:
| Q |
15 |
gttttgattcaagtttttgaaggtgaacgtgcaagaacaaaggataataatcttcttgggaaatttgaactcactggtattcctcctgctccaaggggtg |
114 |
Q |
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| T |
54395899 |
gttttgattcaagtttttgaaggtgaacgtgcaagaacaaaggataataatcttcttgggaaatttgaactcactggtattcctcctgctccaagaggtg |
54395800 |
T |
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| Q |
115 |
taccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcac |
214 |
Q |
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| T |
54395799 |
taccacagatcaatgtttgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcac |
54395700 |
T |
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| Q |
215 |
gaatgataaggggaggttgag |
235 |
Q |
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| T |
54395699 |
gaatgataaggggaggttgag |
54395679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 23588500 - 23588573
Alignment:
| Q |
90 |
ggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaa |
163 |
Q |
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| T |
23588500 |
ggtatccctcctgctccaaggggtgttcctcagatcactgtctgctttgacattgatgccaatggcattttgaa |
23588573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 23597352 - 23597425
Alignment:
| Q |
90 |
ggtattcctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaa |
163 |
Q |
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| T |
23597352 |
ggtattcctcctgctccaaggggtgttcctcagatcactgtctgctttgacatcgatgccaatggcattttgaa |
23597425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 17648701 - 17648789
Alignment:
| Q |
96 |
cctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaac |
184 |
Q |
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| T |
17648701 |
cctcctgctcctagaggtgttccacagatcagtgtatgctttgacattgatgctaatggtatattggatgtctttgctgaagacaaaac |
17648789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 17706448 - 17706530
Alignment:
| Q |
96 |
cctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaaga |
178 |
Q |
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| T |
17706448 |
cctcctgctccttggggtgttccacagatcattgtatgctttgacattgatcctaatggtatattgaatgtctttgctgaaga |
17706530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 8018225 - 8018323
Alignment:
| Q |
135 |
ttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacgatcacgaatgataaggggaggttg |
233 |
Q |
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| T |
8018225 |
ttcgacattgatgccaatggtatcttgaatgtctctgctgaggacaaaacaactgggcagaagaacaagattaccatcaccaatgacaaaggtaggttg |
8018323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 8102047 - 8101925
Alignment:
| Q |
111 |
ggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggagtgaagaacaagataacga |
210 |
Q |
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| T |
8102047 |
ggtgttcctcagatcactgtttgttttgatattgatgccaatggtatcttgaatgtctctgctgaggacaaaacaaccgggcagaagaacaagattacca |
8101948 |
T |
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| Q |
211 |
tcacgaatgataaggggaggttg |
233 |
Q |
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| T |
8101947 |
tcaccaacgataagggaaggttg |
8101925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 226
Target Start/End: Complemental strand, 39985044 - 39984911
Alignment:
| Q |
93 |
attcctcctgctccaaggggtgtaccacagatcaatgtatgtttcgacattgatgcgaatggtatattgaacgtttctgctgaagataaaacagctggag |
192 |
Q |
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| T |
39985044 |
attcctcctgcccccagaggtgttccccaaatcactgtgtgctttgacattgatgccaatggtatcttgaatgtctctgcagaagacaaaacaactggcc |
39984945 |
T |
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| Q |
193 |
tgaagaacaagataacgatcacgaatgataaggg |
226 |
Q |
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| T |
39984944 |
agaagaacaaaatcaccatcaccaatgacaaggg |
39984911 |
T |
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