View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3917_low_18 (Length: 224)

Name: NF3917_low_18
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3917_low_18
NF3917_low_18
[»] chr3 (13 HSPs)
chr3 (17-198)||(46003467-46003665)
chr3 (89-198)||(40244644-40244754)
chr3 (89-198)||(51663469-51663578)
chr3 (92-198)||(51663272-51663378)
chr3 (89-198)||(20537945-20538054)
chr3 (89-198)||(40364060-40364169)
chr3 (93-198)||(20538153-20538258)
chr3 (89-189)||(40364186-40364285)
chr3 (93-198)||(46003271-46003376)
chr3 (136-189)||(46003393-46003446)
chr3 (136-189)||(51663399-51663452)
chr3 (89-132)||(40244873-40244916)
chr3 (136-186)||(20538076-20538126)
[»] chr1 (14 HSPs)
chr1 (89-198)||(37189567-37189676)
chr1 (89-198)||(18844478-18844587)
chr1 (89-198)||(10824588-10824697)
chr1 (88-198)||(22683159-22683269)
chr1 (89-198)||(19056169-19056278)
chr1 (91-195)||(37189388-37189492)
chr1 (93-198)||(10824391-10824496)
chr1 (89-198)||(19056370-19056479)
chr1 (92-182)||(15825756-15825844)
chr1 (89-181)||(18844684-18844777)
chr1 (115-198)||(22683360-22683443)
chr1 (136-189)||(19056295-19056348)
chr1 (136-188)||(22683290-22683342)
chr1 (136-189)||(10824514-10824567)
[»] chr8 (14 HSPs)
chr8 (89-198)||(13884508-13884617)
chr8 (89-198)||(13884707-13884816)
chr8 (89-198)||(29714561-29714670)
chr8 (89-198)||(2554069-2554178)
chr8 (89-198)||(42126401-42126510)
chr8 (89-186)||(29714773-29714870)
chr8 (89-198)||(42126603-42126712)
chr8 (91-198)||(11867901-11868008)
chr8 (116-198)||(14996678-14996761)
chr8 (136-189)||(14996608-14996661)
chr8 (142-189)||(2554005-2554052)
chr8 (109-179)||(15862562-15862632)
chr8 (89-196)||(26745959-26746066)
chr8 (136-189)||(29714691-29714744)
[»] scaffold0781 (1 HSPs)
scaffold0781 (89-196)||(5256-5363)
[»] chr6 (13 HSPs)
chr6 (89-196)||(2216799-2216906)
chr6 (89-198)||(24798644-24798753)
chr6 (89-196)||(24798843-24798950)
chr6 (89-198)||(11643768-11643877)
chr6 (89-189)||(11643977-11644076)
chr6 (89-198)||(18494753-18494860)
chr6 (92-198)||(24690377-24690487)
chr6 (136-189)||(11643898-11643951)
chr6 (89-198)||(18494951-18495060)
chr6 (89-154)||(24690609-24690674)
chr6 (89-177)||(9954826-9954914)
chr6 (89-140)||(9955646-9955697)
chr6 (142-187)||(24798770-24798815)
[»] chr2 (19 HSPs)
chr2 (89-198)||(38982776-38982885)
chr2 (93-198)||(44594457-44594562)
chr2 (92-198)||(2916400-2916506)
chr2 (89-198)||(16973083-16973192)
chr2 (89-198)||(16973283-16973392)
chr2 (92-188)||(11533673-11533770)
chr2 (89-198)||(40987676-40987785)
chr2 (91-198)||(2916596-2916703)
chr2 (93-188)||(38982580-38982675)
chr2 (92-198)||(40987865-40987971)
chr2 (89-181)||(44594267-44594360)
chr2 (89-198)||(13559521-13559629)
chr2 (95-164)||(24126176-24126245)
chr2 (136-189)||(16973213-16973266)
chr2 (95-164)||(24125906-24125975)
chr2 (89-137)||(24125689-24125737)
chr2 (142-189)||(24125804-24125851)
chr2 (136-189)||(44594383-44594436)
chr2 (118-198)||(13559352-13559432)
[»] scaffold0060 (1 HSPs)
scaffold0060 (89-198)||(22924-23033)
[»] chr5 (1 HSPs)
chr5 (89-198)||(21249381-21249490)
[»] chr4 (9 HSPs)
chr4 (93-198)||(39161311-39161416)
chr4 (89-188)||(50509357-50509456)
chr4 (89-198)||(55173472-55173581)
chr4 (91-198)||(39161506-39161613)
chr4 (91-189)||(55173355-55173454)
chr4 (89-182)||(47096819-47096910)
chr4 (92-198)||(47097019-47097122)
chr4 (89-182)||(37996084-37996177)
chr4 (89-171)||(9738137-9738219)
[»] chr7 (13 HSPs)
chr7 (89-198)||(28715661-28715770)
chr7 (89-198)||(28715861-28715970)
chr7 (89-182)||(30862237-30862330)
chr7 (89-198)||(6474299-6474409)
chr7 (89-198)||(41985929-41986038)
chr7 (92-198)||(47373484-47373592)
chr7 (89-198)||(47373681-47373790)
chr7 (89-198)||(30862439-30862548)
chr7 (89-198)||(6474500-6474608)
chr7 (89-196)||(38408121-38408228)
chr7 (91-140)||(41986185-41986234)
chr7 (89-196)||(6271188-6271295)
chr7 (136-189)||(47373612-47373665)
[»] scaffold0034 (1 HSPs)
scaffold0034 (130-182)||(108055-108107)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 46003665 - 46003467
Alignment:
Q  17 caagattggtcataaaatttgcttaagacttacttttaattttgggatgtaataataataata-ttttaagact----------------cccttaactt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||                ||||||||||    
T  46003665 caagattggtcataaaatttgcttaagacttacttttaattttgggatgtaataataataatacttttaagacttatttaatcatctggtcccttaactt 46003566  T
Q  100 aattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggtagtttct 198  Q
    |||||||||||||| ||||||||||||| || ||||||||| |||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  46003565 aattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcattactagttttagtcctttctggtagtttct 46003467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 40244644 - 40244754
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttgg-tcccctttgttttgcttcgttactagttttagtcatttc 187  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||||    
T  40244644 tcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttgttactagttttagtcatttc 40244743  T
Q  188 tggtagtttct 198  Q
    || ||||||||    
T  40244744 tgttagtttct 40244754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 51663578 - 51663469
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||| || |||||||||  ||||||||||||||||||||||    
T  51663578 tcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgttactagttttagtcatttct 51663479  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  51663478 gttagtttct 51663469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 51663272 - 51663378
Alignment:
Q  92 cttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggt 191  Q
    |||||||||||||||||| | | | |||||| |||| |||||||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  51663272 cttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgttactagttttagtcatttctggt 51663371  T
Q  192 agtttct 198  Q
    |||||||    
T  51663372 agtttct 51663378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 20537945 - 20538054
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||  | ||| |||| |||||||| |||||||||| | ||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  20537945 tcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattactagttttagtcctttct 20538044  T
Q  189 ggtagtttct 198  Q
      ||||||||    
T  20538045 attagtttct 20538054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 40364060 - 40364169
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||| ||| | ||||||||| |||||||||||||||  |||||| |||||| | ||||||| ||||| ||||||||||||||| |    
T  40364060 tcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgttattagttttagtcattttt 40364159  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  40364160 gttagtttct 40364169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 20538258 - 20538153
Alignment:
Q  93 ttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggta 192  Q
    |||| |||||||||||||||| |||| |||||||| |||||||||||  ||||| ||   || ||||||||| |||||||||||||||||||||||| ||    
T  20538258 ttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgttactagttttagtcatttctgtta 20538159  T
Q  193 gtttct 198  Q
    ||||||    
T  20538158 gtttct 20538153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 40364285 - 40364186
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||| ||| ||||||| ||||| |||||||||||| |||||| | |||| ||||||| | |||||||||||||||| ||||||    
T  40364285 tcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttgttccgttactagttttagtgatttct 40364187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 46003271 - 46003376
Alignment:
Q  93 ttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggta 192  Q
    ||||||||||||||||| | | ||||||||||||| |||||||||||  |||||||||| || |||| || |  ||||| |||||||||| ||| || ||    
T  46003271 ttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctgttacaagttttagtcctttttgtta 46003370  T
Q  193 gtttct 198  Q
    ||||||    
T  46003371 gtttct 46003376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 46003446 - 46003393
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||| |||||||||| || ||||||||||||||||||||||||||| ||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttctg 46003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 51663399 - 51663452
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||||||||||||||||| |||||||||  ||| |||||||||||||||||||    
T  51663399 tgtactaatttggtcccctatgttttgctctgttcctagttttagtcatttctg 51663452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 40244916 - 40244873
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattata 132  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  40244916 tcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 20538076 - 20538126
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcattt 186  Q
    ||||| ||||||||||||| |||||||||| |||| |||||||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtcattt 20538126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 37189676 - 37189567
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  37189676 tcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcatttct 37189577  T
Q  189 ggtagtttct 198  Q
    ||||||||||    
T  37189576 ggtagtttct 37189567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 18844478 - 18844587
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  18844478 tcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcatttct 18844577  T
Q  189 ggtagtttct 198  Q
    ||||||||||    
T  18844578 ggtagtttct 18844587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 10824697 - 10824588
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  10824697 tcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcctttct 10824598  T
Q  189 ggtagtttct 198  Q
     |||||||||    
T  10824597 agtagtttct 10824588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 22683159 - 22683269
Alignment:
Q  88 ctcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttc 187  Q
    |||| ||||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||||||| |||||||||| |||||||||||||||| ||||    
T  22683159 ctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgttactagttttagtcctttc 22683258  T
Q  188 tggtagtttct 198  Q
    || ||||||||    
T  22683259 tgttagtttct 22683269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 19056169 - 19056278
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||||  ||||||||||||| | |||||||| |||||||||||||||| |||||    
T  19056169 tcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgttactagttttagtcttttct 19056268  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  19056269 gttagtttct 19056278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 37189388 - 37189492
Alignment:
Q  91 ccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctgg 190  Q
    ||||||||||||||||||||||| ||||||| | ||| |||||||||||| |||||||||| || ||||||||| ||||||||||||||||| ||||||     
T  37189388 ccttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctgt 37189487  T
Q  191 tagtt 195  Q
    |||||    
T  37189488 tagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 10824391 - 10824496
Alignment:
Q  93 ttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggta 192  Q
    ||||||||||||||| |  || |||||||||||||||||||||||||  |||||||||| || ||||||||| ||||||||||||||||| |||||| ||    
T  10824391 ttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtcctttctgtta 10824490  T
Q  193 gtttct 198  Q
    ||||||    
T  10824491 gtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 19056479 - 19056370
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||| | | ||||||||||||| |||||| ||||| ||||||||  ||| |||||||||| ||||||||||||||||||||||    
T  19056479 tcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttgttactagttttagtcatttct 19056380  T
Q  189 ggtagtttct 198  Q
    |  |||||||    
T  19056379 gtcagtttct 19056370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 15825844 - 15825756
Alignment:
Q  92 cttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtc 182  Q
    |||||||||||||||||||||| ||||||||  ||| |||||||||||| ||||||||||||| |||||||||| |||| |||||||||||    
T  15825844 cttaacttaattgattgtctcaatttggtcc--taactataatttgtaccaatttggtcccctatgttttgctttgttattagttttagtc 15825756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 18844777 - 18844684
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtc-ccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagt 181  Q
    ||||||||||||||||||||||||| ||||||  |||||| |||||||||||  |||||||||| || ||||||||| ||||||||||||||||    
T  18844777 tcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctccgttactagttttagt 18844684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 22683443 - 22683360
Alignment:
Q  115 tttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggtagtttct 198  Q
    ||||||||||||| | | |||||||| |||||||||| || ||||||||| ||||||||||||||||| |||||  ||||||||    
T  22683443 tttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttct 22683360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 19056348 - 19056295
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||| ||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagtttaagtcttttctg 19056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 22683290 - 22683342
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttct 22683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 10824567 - 10824514
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||| |||||| |||||| ||||||||| |||| |||||||||||| ||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttctg 10824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 13884508 - 13884617
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |||||    
T  13884508 tcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgttactagttttagtcttttct 13884607  T
Q  189 ggtagtttct 198  Q
    ||||||||||    
T  13884608 ggtagtttct 13884617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 13884816 - 13884707
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||||| || ||||||||||||||||| ||||||||| ||| |    
T  13884816 tcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgttactggttttagtccttttt 13884717  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  13884716 gttagtttct 13884707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 29714561 - 29714670
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| |||||||||| || |||| ||||||| ||||||||||||| | |||||||| |||||||| |||| ||||||||    
T  29714561 tcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgttactagctttaatcatttct 29714660  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  29714661 gttagtttct 29714670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 2554178 - 2554069
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||||||| | ||||||||| ||| |||||||||| |||||| ||||||||  |||||    
T  2554178 tcccttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttttagttctttct 2554079  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  2554078 gttagtttct 2554069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 42126401 - 42126510
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||| ||||||||| |||| | | |||| |||||||||||  ||||||| ||||| |||||||||||| |||||||||||||| |||||    
T  42126401 tcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgcttcgctactagttttagtcctttct 42126500  T
Q  189 ggtagtttct 198  Q
    ||||||||||    
T  42126501 ggtagtttct 42126510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 29714870 - 29714773
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcattt 186  Q
    ||||||||||||||||||||| | | ||||||||| ||| |||||||||||  |||||||||| || ||||||||||| |||||||||||||||||||    
T  29714870 tcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcattactagttttagtcattt 29714773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 42126712 - 42126603
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||| ||||| |||| |||||||| |||||||||||| |||||||||| ||  ||||||||  || |||| ||||||||||||||    
T  42126712 tcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtcactaattttagtcatttct 42126613  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  42126612 gttagtttct 42126603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 11868008 - 11867901
Alignment:
Q  91 ccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctgg 190  Q
    ||||||||||||||||||||||| |||||| || ||| |||||||||||  |||||||||| || ||||||| || || ||||||||||||| ||| ||     
T  11868008 ccttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgatttgtcactagttttagtcctttatgt 11867909  T
Q  191 tagtttct 198  Q
    ||||||||    
T  11867908 tagtttct 11867901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 14996761 - 14996678
Alignment:
Q  116 ttggtcccctaattataatttgtactaatttggtcccctt-tgttttgcttcgttactagttttagtcatttctggtagtttct 198  Q
    ||||||||||||||||||||||||| |||||| ||||| | |||||||||| |||||||||||||||| |||||| ||||||||    
T  14996761 ttggtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 14996608 - 14996661
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagtcttttctg 14996661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 2554005 - 2554052
Alignment:
Q  142 aatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||||    
T  2554005 aatttggtcccctatgttttacttcgttactagttttagtcctttctg 2554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 15862632 - 15862562
Alignment:
Q  109 tctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagtttta 179  Q
    ||||| |||| |||||||| ||||||||||| ||||||||||| || || |||||| ||||||| ||||||    
T  15862632 tctcaatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggtttta 15862562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 26746066 - 26745959
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    |||||||||||| ||| |||| |||  |||||||||||| |||||||||||| || || |||| ||  |||||||| | |||| |||||  ||| |||||    
T  26746066 tcccttaacttatttgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccattaccagtttcggtcctttct 26745967  T
Q  189 ggtagttt 196  Q
    | ||||||    
T  26745966 gttagttt 26745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 29714691 - 29714744
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||| ||||||||| ||| |||||| || ||||||||||||||||| ||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttctg 29714744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 5363 - 5256
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||| |    
T  5363 tcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttattagttttagtcatttat 5264  T
Q  189 ggtagttt 196  Q
    | ||||||    
T  5263 gttagttt 5256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 2216906 - 2216799
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||| |    
T  2216906 tcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttattagttttagtcatttat 2216807  T
Q  189 ggtagttt 196  Q
    | ||||||    
T  2216806 gttagttt 2216799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 24798644 - 24798753
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    |||||||||||||||| |||| ||| ||||||||||| | |||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||    
T  24798644 tcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgttactagttttagtcatttct 24798743  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  24798744 gttagtttct 24798753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 24798950 - 24798843
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    |||||||| |||||||||||||| | |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  24798950 tcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcctttct 24798851  T
Q  189 ggtagttt 196  Q
     |||||||    
T  24798850 agtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 11643768 - 11643877
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    |||||||| |||||||||||||||| |||| |||||||| |||||||||||  |||||||| |||| ||||||| || |||||||||||||||| | |||    
T  11643768 tcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactagttttagtcctctct 11643867  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  11643868 gttagtttct 11643877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 11644076 - 11643977
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggt-cccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttc 187  Q
    ||||||||||||||||||||||||| |||||| ||||||| |||||||||||  |||||||| |||| |||||| ||| |||||||||||||||| ||||    
T  11644076 tcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-ctttgttactagttttagtcttttc 11643979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 18494753 - 18494860
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||| ||||||||||||| |||||| |||||  |||||||||||| | ||||||||||| || ||||||| |||||||||||||||| ||| |    
T  18494753 tcccttaactttattgattgtctcaatttggt-ccctagctataatttgtaccattttggtcccctatg-tttgctttgttactagttttagtccttttt 18494850  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  18494851 gttagtttct 18494860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 24690377 - 24690487
Alignment:
Q  92 cttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgct----tcgttactagttttagtcatttc 187  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||||| || |||||||||      |||||||||||||| ||||||    
T  24690377 cttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgctctaggtgttactagttttagccatttc 24690476  T
Q  188 tggtagtttct 198  Q
    || || |||||    
T  24690477 tgttattttct 24690487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 11643898 - 11643951
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcatttctg 11643951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 18495060 - 18494951
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||| | | | |||| |||| ||| |||||||||||  ||||||||||||| | ||||| | ||||| ||||||||||  |||||    
T  18495060 tcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgttattagttttagttctttct 18494961  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  18494960 gttagtttct 18494951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 24690674 - 24690609
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccct 154  Q
    ||||||||||||||||||||| | | |||||| |||||| |||||||||||| |||||||||||||    
T  24690674 tcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccct 24690609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 9954826 - 9954914
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttt 177  Q
    |||||||||||||||| ||||  ||  |||||||||||| |||||||||||| || || |||| ||  |||||||| |||||| |||||    
T  9954826 tcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagttt 9954914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 9955697 - 9955646
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtac 140  Q
    |||||||||||||||| |||| |||  |||||||||||| ||||||||||||    
T  9955697 tcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtac 9955646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 24798815 - 24798770
Alignment:
Q  142 aatttggtcccctttgttttgcttcgttactagttttagtcatttc 187  Q
    ||||||||||||| ||||||||| |||| |||||||||||| ||||    
T  24798815 aatttggtcccctatgttttgctccgttcctagttttagtcctttc 24798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 38982885 - 38982776
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||||||  |||||||| || | ||||||||||| |||||||||||||||||||||    
T  38982885 tcccttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtcatttct 38982786  T
Q  189 ggtagtttct 198  Q
    ||||||||||    
T  38982785 ggtagtttct 38982776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 44594562 - 44594457
Alignment:
Q  93 ttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggta 192  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||  ||||||||||  | |||||||||||||||||||||||||||||||||||||    
T  44594562 ttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttactagttttagtcatttctggta 44594463  T
Q  193 gtttct 198  Q
    ||||||    
T  44594462 gtttct 44594457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 2916400 - 2916506
Alignment:
Q  92 cttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggt 191  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||| |||||||||| ||||||||||||| || |||||| |    
T  2916400 cttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgttactagttttaatcctttctgtt 2916499  T
Q  192 agtttct 198  Q
    |||||||    
T  2916500 agtttct 2916506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 16973083 - 16973192
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||| | ||||||||||||| |||| ||||||| ||||||||||||| |||||||||||||||||||||||| |  |||||    
T  16973083 tcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgttactagttttaattctttct 16973182  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  16973183 gttagtttct 16973192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 16973392 - 16973283
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||   |||||||||| || ||||||||| | |||||||||||||||||||||    
T  16973392 tcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccattactagttttagtcatttct 16973293  T
Q  189 ggtagtttct 198  Q
    |  |||||||    
T  16973292 gtcagtttct 16973283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 11533770 - 11533673
Alignment:
Q  92 cttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggt-cccctttgttttgcttcgttactagttttagtcatttct 188  Q
    |||||||||| ||||||||||| |||||||||| || |||||||||||| |||||||| ||||| ||||||||||  |||||||||||||||||||||    
T  11533770 cttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgctttattactagttttagtcatttct 11533673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 40987676 - 40987785
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| |||||| |||||| |||||||||||| ||||| ||| | | ||||||| || |||||||||||||||| ||| |    
T  40987676 tcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgttactagttttagtcttttat 40987775  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  40987776 gttagtttct 40987785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 2916703 - 2916596
Alignment:
Q  91 ccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctgg 190  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||||||| || ||| ||| || | |||||||  |||||||||||| ||| ||||||     
T  2916703 ccttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttactagttttggtcctttctgt 2916604  T
Q  191 tagtttct 198  Q
    ||||||||    
T  2916603 tagtttct 2916596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 38982580 - 38982675
Alignment:
Q  93 ttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||| |||||  |||||| |||||||||||| |||||||||   | |||||||||||||| |||||||||||| |||||    
T  38982580 ttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgttgctagttttagtcctttct 38982675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 40987971 - 40987865
Alignment:
Q  92 cttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggt 191  Q
    |||||||||||| ||||||||| |||| ||| |||| ||||||||||| |||||||||||||| | |||||||   || ||| ||||||||||||||| |    
T  40987971 cttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaattttagtcatttctgtt 40987872  T
Q  192 agtttct 198  Q
    |||||||    
T  40987871 agtttct 40987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 44594267 - 44594360
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtc-ccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagt 181  Q
    ||||||||||||||||||||||||| ||||||  |||||| |||||||||||  |||||||||| || |||||||||  |||||||||||||||    
T  44594267 tcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctctgttactagttttagt 44594360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 13559629 - 13559521
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||| ||| |||||| |||||| ||||||||||| | | |||||||| | || ||||||  |||||||| ||||||||||| |    
T  13559629 tcccttaacttaattgattgtttcaatttggttccctaactataatttgta-tcaattggtcccttgtgctttgctctgttactagatttagtcatttat 13559531  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  13559530 gttagtttct 13559521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 24126245 - 24126176
Alignment:
Q  95 aacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgct 164  Q
    ||||||||||||| ||||| ||||||| ||||| |||||||||||| ||||||||||| | |||||||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct 24126176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 16973213 - 16973266
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctg 16973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 24125975 - 24125906
Alignment:
Q  95 aacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgct 164  Q
    ||||||||| ||| ||||| ||||||| ||||| |||||||||||| ||||||||||| | |||||||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct 24125906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 24125689 - 24125737
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttg 137  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  24125689 tcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 24125851 - 24125804
Alignment:
Q  142 aatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||||||||||| |||||||||  |||| ||||||||||||||||||    
T  24125851 aatttggtcccctatgttttgctctgttattagttttagtcatttctg 24125804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 44594436 - 44594383
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||| ||||| ||||||| ||||||||| |||| |||||||||||| ||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttctg 44594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 13559352 - 13559432
Alignment:
Q  118 ggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggtagtttct 198  Q
    |||| ||||| ||||||||||   ||||||||| | | | ||||| || |||| |||||||||||||||||| ||||||||    
T  13559352 ggtctcctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttct 13559432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 23033 - 22924
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||||||| |||||| ||| || ||||||||| ||||||||||||||||| |||||    
T  23033 tcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgttactagttttagtcctttct 22934  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  22933 gttagtttct 22924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 21249381 - 21249490
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||| || |||||    
T  21249381 tcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgttactagttttaatcctttct 21249480  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  21249481 gttagtttct 21249490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 39161311 - 39161416
Alignment:
Q  93 ttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggta 192  Q
    ||||||||||||| ||||| | ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||  |    
T  39161311 ttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctgaaa 39161410  T
Q  193 gtttct 198  Q
    ||||||    
T  39161411 gtttct 39161416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 50509456 - 50509357
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||||||| |||||||| |||||    
T  50509456 tcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttactaattttagtcttttct 50509357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 55173581 - 55173472
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| |||| || ||||| |||||||||||| ||||||||||||| || ||||||| |||||| ||||||||| ||| |    
T  55173581 tcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctttgctttgttacttgttttagtctttttt 55173482  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  55173481 gctagtttct 55173472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 39161613 - 39161506
Alignment:
Q  91 ccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctgg 190  Q
    ||||||||||||||||||| | | ||||||||||||| |||||||||||| ||||| |||| || ||||||||| ||||| ||||||||||| ||||||     
T  39161613 ccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccgttattagttttagtcctttctgt 39161514  T
Q  191 tagtttct 198  Q
    ||||||||    
T  39161513 tagtttct 39161506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 55173355 - 55173454
Alignment:
Q  91 ccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggt-cccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||| ||||| | ||||||| ||||||||||||||||| ||||||    
T  55173355 ccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgttactagttttagtcctttctg 55173454  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 47096819 - 47096910
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtc 182  Q
    ||||||||||||||||||| ||||| |||||||||||||  ||||||||||| ||||| | ||||| ||||||||||||||||| |||||||||    
T  47096819 tcccttaacttaattgattatctcaatttggtcccctaa-cataatttgtaccaattt-gccccctatgttttgcttcgttacttgttttagtc 47096910  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 47097122 - 47097019
Alignment:
Q  92 cttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctggt 191  Q
    |||||||||||||||||||||| ||| |||| |||| |||||||||||| |||||| |   || ||||||||  ||||||||||||||||||||| || |    
T  47097122 cttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccgttactagttttagtcatttttgtt 47097026  T
Q  192 agtttct 198  Q
    |||||||    
T  47097025 agtttct 47097019  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 37996084 - 37996177
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtc 182  Q
    |||||||| | || ||||||| ||| ||||||||| ||| |||||||||||  ||||||||||||| |||||||||| |||| |||||||||||    
T  37996084 tcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttattagttttagtc 37996177  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 9738137 - 9738219
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttac 171  Q
    |||||||||||||||| ||||  ||  |||||||||||| |||||||||||| || || |||| ||  |||||||| ||||||    
T  9738137 tcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttac 9738219  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 28715661 - 28715770
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||| ||||| | | ||||||  ||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  28715661 tcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcctttct 28715760  T
Q  189 ggtagtttct 198  Q
    ||||||||||    
T  28715761 ggtagtttct 28715770  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 28715970 - 28715861
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||||||| |||||||||| ||  ||||||||  || |||||||||||||||||||    
T  28715970 tcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctcagtcactagttttagtcatttct 28715871  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  28715870 gttagtttct 28715861  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 30862237 - 30862330
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtc 182  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||| | |||||||| ||||||||||||||||    
T  30862237 tcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgctttgttactagttttagtc 30862330  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 6474299 - 6474409
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttg-ttttgcttcgttactagttttagtcatttc 187  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||||| ||  ||||||||||||| || |||||||| |||||||||||||||| ||||    
T  6474299 tcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttgttactagttttagtcttttc 6474398  T
Q  188 tggtagtttct 198  Q
    || ||||||||    
T  6474399 tgttagtttct 6474409  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 41985929 - 41986038
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||||||   ||||||||||| | |||||||||| ||||||| |||||||| ||||     
T  41985929 tcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgttactaattttagtcctttcc 41986028  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  41986029 gttagtttct 41986038  T

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Target: chr7; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 47373484 - 47373592
Alignment:
Q  92 cttaacttaattgattgtctcagtttggtcccctaattata--atttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    |||||||||||||||||||||| |||| ||| |||||||||  |||||||| ||||||||||||| |||||||||  ||| |||||||||||||||| ||    
T  47373484 cttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctgttgctagttttagtcatttatg 47373583  T
Q  190 gtagtttct 198  Q
     ||||||||    
T  47373584 ttagtttct 47373592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 47373790 - 47373681
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| | | ||||||| |  ||||||||||||| || ||| |    
T  47373790 tcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatcctttat 47373691  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  47373690 gttagtttct 47373681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 30862548 - 30862439
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    |||||||| | |||||||||| ||| ||| || |||||| |||||||||||  ||||||||||| | |||||||||  ||||||| |||||||| |||||    
T  30862548 tcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttactaattttagtcttttct 30862449  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  30862448 gttagtttct 30862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 6474608 - 6474500
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    ||||||||||||||||||||||| | ||||||| ||||| ||||| ||||||  ||||| |||| | || ||||||  |||||||||||||||| ||| |    
T  6474608 tcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctctgttactagttttagtcctttat 6474510  T
Q  189 ggtagtttct 198  Q
    | ||||||||    
T  6474509 gttagtttct 6474500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 38408228 - 38408121
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    |||||||||||||||| |||| |||  |||||||||||| |||||||||||| || || |||| ||  ||||||||  ||||| |||||  ||| |||||    
T  38408228 tcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttct 38408129  T
Q  189 ggtagttt 196  Q
    | ||||||    
T  38408128 gttagttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 41986234 - 41986185
Alignment:
Q  91 ccttaacttaattgattgtctcagtttggtcccctaattataatttgtac 140  Q
    |||||||||||||| |||||||| |||| |||||||| ||||||||||||    
T  41986234 ccttaacttaattgtttgtctcaatttgatcccctaactataatttgtac 41986185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 6271295 - 6271188
Alignment:
Q  89 tcccttaacttaattgattgtctcagtttggtcccctaattataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttct 188  Q
    |||||||||||||||| || |  ||  |||||||||||| |||||||||||| || || ||||  |  |||||||| ||||||||||||  ||| |||||    
T  6271295 tcccttaacttaattgtttctaccaaattggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttct 6271196  T
Q  189 ggtagttt 196  Q
    | ||||||    
T  6271195 gttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 47373612 - 47373665
Alignment:
Q  136 tgtactaatttggtcccctttgttttgcttcgttactagttttagtcatttctg 189  Q
    ||||| ||||| ||||||| ||||||||| ||||| ||||||||||| ||||||    
T  47373612 tgtaccaatttagtcccctatgttttgctccgttattagttttagtcgtttctg 47373665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 108055 - 108107
Alignment:
Q  130 ataatttgtactaatttggtcccctttgttttgcttcgttactagttttagtc 182  Q
    ||||||||||  |||||||||| || ||||||||| | |||||||||||||||    
T  108055 ataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtc 108107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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