View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3917_low_19 (Length: 215)
Name: NF3917_low_19
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3917_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 68 - 202
Target Start/End: Complemental strand, 33452170 - 33452036
Alignment:
| Q |
68 |
gtatcttattactaagtctacctttttagggttaaattggagaacatatgtgactccaaattctgaaaatttattgacttacttatatattgtatatctc |
167 |
Q |
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| T |
33452170 |
gtatcttattactaagtctacctttttagggttccattggagaacatatgtgactccaaattctgaaaatttattgacttacttatatattgtatatctc |
33452071 |
T |
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| Q |
168 |
catgcatgttggccaaatcacaagttcatcctatg |
202 |
Q |
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| T |
33452070 |
catgcatgttggccaaatcacaagttcatcctatg |
33452036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 202
Target Start/End: Complemental strand, 13705345 - 13705205
Alignment:
| Q |
68 |
gtatcttattactaagtctacctttttagggttaaattggagaacat------atgtgactccaaattctgaaaatttattgacttacttatatattgta |
161 |
Q |
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| T |
13705345 |
gtatcttattactaagtctacctttttagggttccatttgagaacatctgaacatgtgactccaaattctgaaaatttattgacttacttatatattgta |
13705246 |
T |
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| Q |
162 |
tatctccatgcatgttggccaaatcacaagttcatcctatg |
202 |
Q |
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| T |
13705245 |
tatcttcatgcatgttggccaaatcgcaagttcatcctatg |
13705205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 202
Target Start/End: Complemental strand, 37069534 - 37069403
Alignment:
| Q |
68 |
gtatcttattactaagtctacctttttagggttaaattggagaacatatgtgactccaaattctgaaaatttattgacttacttatatattgtatatctc |
167 |
Q |
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| T |
37069534 |
gtatcttattactaagtctacctttttagggttccatttgagaacat--gtgactccaaattctgaaaatttattgacttacttatatattgtatatctc |
37069437 |
T |
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| Q |
168 |
catgcatgttggccaaatcacaagttcatcctatg |
202 |
Q |
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| T |
37069436 |
catgcatgttggccaaatcgcaagtt-atcctatg |
37069403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 17461659 - 17461595
Alignment:
| Q |
72 |
cttattactaagtctacctttttagggttaaattggagaacatatgtgactccaaattctgaaaatt |
138 |
Q |
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|||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||| |
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| T |
17461659 |
cttattgctaagtctacctttttagggttcccttggagaac--atgtggctccaaattttgaaaatt |
17461595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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