View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3917_low_3 (Length: 586)
Name: NF3917_low_3
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3917_low_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 11 - 571
Target Start/End: Original strand, 5110923 - 5111483
Alignment:
| Q |
11 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttg |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5110923 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttc |
5111022 |
T |
|
| Q |
111 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5111023 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtgaatgcattggatcttaataacatggaccttgaaggtacaatttctcctc |
5111122 |
T |
|
| Q |
211 |
aactgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaagagattgaaatg |
310 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5111123 |
aattgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaagagattgaaatg |
5111222 |
T |
|
| Q |
311 |
gttggatttgagcaacaatgattttgttggagaaattccttcaaggataggggacttagcaaaacttcatcatttggatctttacttcaataattttgtt |
410 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5111223 |
gttggatttgagtgacaatgattttgttggagaaattccttcaaggataggggacttagcaaaacttcatcatttggatctttactttaataattttgtt |
5111322 |
T |
|
| Q |
411 |
ggagctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgagtacaaatttcatcaaagaaactattccacatgctattggtcaac |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |
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| T |
5111323 |
ggagctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgagtacaaatttcatcaaaggaaccattccacatgccattggtcaac |
5111422 |
T |
|
| Q |
511 |
ttgatcagttgaggattttggatattagtaataacatgctgtctggaatcataccaacaac |
571 |
Q |
| |
|
||| | ||||||||||||||||||||| ||||||| ||| | ||||||| |||||||||| |
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|
| T |
5111423 |
ttggtatgttgaggattttggatattagaaataacaagctctgtggaatcctaccaacaac |
5111483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 571
Target Start/End: Complemental strand, 5084148 - 5083588
Alignment:
| Q |
11 |
cacagatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttg |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
5084148 |
cacagatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatatgcttagaaattggtcaatttcctcttctacttcttctttc |
5084049 |
T |
|
| Q |
111 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
5084048 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatggaccttgaaggtacaatttcccctc |
5083949 |
T |
|
| Q |
211 |
aactgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaagagattgaaatg |
310 |
Q |
| |
|
|| |||||||||| ||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5083948 |
aattgggaaatctctctttccttgtatttcttgatctacaaggaaatagtttccatggtgagttaccacatgagttacttcagttgaagagattgaaatt |
5083849 |
T |
|
| Q |
311 |
gttggatttgagcaacaatgattttgttggagaaattccttcaaggataggggacttagcaaaacttcatcatttggatctttacttcaataattttgtt |
410 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| || || ||| ||||| |
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|
| T |
5083848 |
gttgaatttgagcaacaatgattttgttggagaaattccttcaaggataggggacttatcaaaacttcaacaattggatattcggcaaaacaatattgtt |
5083749 |
T |
|
| Q |
411 |
ggagctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgagtacaaatttcatcaaagaaactattccacatgctattggtcaac |
510 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| || ||| |||||| ||||| |||||||| ||| ||||||||||| ||| |||||| |
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|
| T |
5083748 |
ggagttattcctcaatctatatccaacttgtcaatgttagaatatctaaatttgaaatcaaatcacatcaaaggaaccattccacatgccattagtcaac |
5083649 |
T |
|
| Q |
511 |
ttgatcagttgaggattttggatattagtaataacatgctgtctggaatcataccaacaac |
571 |
Q |
| |
|
||| | ||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||| |
|
|
| T |
5083648 |
ttggtatgttgaggattttggatattagaaataacaagctctctggaatcctaccaacaac |
5083588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 571
Target Start/End: Original strand, 5093924 - 5094473
Alignment:
| Q |
15 |
gatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtctt |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5093924 |
gatgaattttcacttcttgcattcaaatcctcaataaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttgtctt |
5094023 |
T |
|
| Q |
115 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaact |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| | |
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|
| T |
5094024 |
catgcaattgggttggtgttacttgtgatgaacaccatggaagagtaaatgcattgaatcttagtagcatgggccttgaaggtacaatttctcctcaatt |
5094123 |
T |
|
| Q |
215 |
gggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttgaagagattgaaatggttg |
314 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
5094124 |
gggaaatctttctttccttattgttcttgatttacagggcaatagtttccatggtgagttaccacatgagttgcttcagttgaaaagattgaaattgttg |
5094223 |
T |
|
| Q |
315 |
gatttgagcaacaatgattttgttggagaaattccttcaaggataggggacttagcaaaacttcatcatttggatctttacttcaataattttgttggag |
414 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||||| || || |||||| ||||||||| |
|
|
| T |
5094224 |
aatttaagcaacaatgattttgttggagaaattccttcaaggataggggagttatcaaaacttcaacaattggatattagctataataatattgttggag |
5094323 |
T |
|
| Q |
415 |
ctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgagtacaaatttcatcaaagaaactattccacatgctattggtcaacttga |
514 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| || ||| ||||| |||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
5094324 |
ttattcctcaatctatattcaacttgtcaatgttagaatatctacgtttga----------catcaaaggaaccattccacatgcaattggtcaacttcg |
5094413 |
T |
|
| Q |
515 |
tcagttgaggattttggatattagtaataaca---tgctgtctggaatcataccaacaac |
571 |
Q |
| |
|
|||||||||| |||| |||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
5094414 |
tcagttgaggtatttgagtattggtaataacaggttgctgtctggaatgataccaacaac |
5094473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 14427926 - 14427589
Alignment:
| Q |
15 |
gatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtctt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| |||| |
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|
| T |
14427926 |
gatgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatattcttagtaattggtcaatttccacttctgcttcttctttctctt |
14427827 |
T |
|
| Q |
115 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaact |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| | |
|
|
| T |
14427826 |
catgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcctcaatt |
14427727 |
T |
|
| Q |
215 |
gggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttacttcagttg---aagagattgaaatgg |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |||| ||| || ||||||||| | |
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|
| T |
14427726 |
aggaaatctctctttccttgttgttcttgatctacatggcaatagtttccatggtgagttaccacatgagttatttcaattgcataatagattgaaaatg |
14427627 |
T |
|
| Q |
312 |
ttggatttgagcaacaatgattttgttggagaaattcc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14427626 |
ttggatttgagcaacaatgattttgttggagaaattcc |
14427589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 16872369 - 16872553
Alignment:
| Q |
14 |
agatgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaat---tggtcaatttcatcttctacttcttctttg |
110 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||| | |
|
|
| T |
16872369 |
agatgaattttcacttcttgcattcaaatcctctattaccttagacccttatcacaagcttagtaataattggtcaatctcctcttctacttctt---tc |
16872465 |
T |
|
| Q |
111 |
tcttcatgcaattgggttggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggta |
198 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||| |||| |||||||||| |
|
|
| T |
16872466 |
tcatcatgtaattgggttggtgtcacttgtgatgagcatcatggaagagtaaaggcattgaatcttagtaatatgggacttgaaggta |
16872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 190 - 350
Target Start/End: Original strand, 16873359 - 16873519
Alignment:
| Q |
190 |
ttgaaggtacaatttctcctcaactgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttact |
289 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
16873359 |
ttgaaggtacaatttcctctcaattgggaaatctctctttccttgttattcttgacctacaaggcaatagtttccatggtgagtttccacaagagttact |
16873458 |
T |
|
| Q |
290 |
tcagttgaagagattgaaatggttggatttgagcaacaatgattttgttggagaaattcct |
350 |
Q |
| |
|
||| || ||||| |||| | || || |||||| |||||||||||||||||||||||||| |
|
|
| T |
16873459 |
tcatctgcagagactgaagagattagacttgagctacaatgattttgttggagaaattcct |
16873519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 16873495 - 16873576
Alignment:
| Q |
398 |
caataattttgttggagctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgagtacaaatttcatcaaag |
483 |
Q |
| |
|
|||| |||||||||||| |||||||||||| || |||||||||||||| |||||||||||| || ||||| ||||||||| |
|
|
| T |
16873495 |
caatgattttgttggagaaattcctcaatct----ccaacttgtcaatgttagagtacctagatttaagatcaaatctcatcaaag |
16873576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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