View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3917_low_5 (Length: 438)
Name: NF3917_low_5
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3917_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 52 - 423
Target Start/End: Original strand, 14902086 - 14902457
Alignment:
| Q |
52 |
tagatagaatattggaataactataagagcttaggcatgtaaaccaattataaaatcacctgtcatagcaaaatcatatgcagccccttctgttaggcaa |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14902086 |
tagatagaatattggaataactataagagcttaggcatgtaaaccaattataaaatcatctgtcatagcaaaatcatatgcagccccttctgttaggcaa |
14902185 |
T |
|
| Q |
152 |
tggcatgcatgtgataaaagtcgttattcttgatgcatcaataagtcgtcttgtacaagcaatgatcaggaatgcttgctgcctttctcatcaggttcaa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14902186 |
tggcatgcatgtgataaaagtcgttattcttgatgcatcaataagtcgtcttgtacaagcaatgatcaggaatgcttgctgcctttctcatcaggttcaa |
14902285 |
T |
|
| Q |
252 |
ttgaataacactaggattagtactgtttttccttatgtgttctcattattcaattgccttatcaatgaaaatggaaaatttaaatgggaattgaattacc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14902286 |
ttgaataacactaggattagtactgtttttccttatgtgttctcattattcaattgccttatcaatgaaaatggaaaatttaaatgggaattgaattaca |
14902385 |
T |
|
| Q |
352 |
ctttgtttataacgcactctgacattgtttttattctttacatgactttattatccagacttcgtgatttgt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14902386 |
ctttgtttataacgcactctgacattgtttttattctttacatgactttattatccagacttcgtgatttgt |
14902457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14901993 - 14902021
Alignment:
| Q |
1 |
caaagtgggatgacatatggaatgattca |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14901993 |
caaagtgggatgacatatggaatgattca |
14902021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University