View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3917_low_7 (Length: 404)
Name: NF3917_low_7
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3917_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 18219670 - 18219342
Alignment:
| Q |
11 |
cataggattgagtgttttcattgcaaaataatgatgttatgattgctatgaactttaccctcaaaaatctatatttatttgttcagagtgtaccatagag |
110 |
Q |
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| T |
18219670 |
cataggattgagtgttttcattgcaaaataatgatgttatgattgctatgaactttaccctcaaaaatctatatttattagtccagagtgtaccatagag |
18219571 |
T |
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| Q |
111 |
tatgaacagaactataagaaatcccattatgatattgtgtgatgttacttgttatagtttactttacattctcatccatctatgccaataaatgttgaag |
210 |
Q |
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| T |
18219570 |
tatgaacagaattataa-aaatcccattatgatattgtgtgatgttgcttgttatattttactttatattcccatccatctatccgaataaatgttgaag |
18219472 |
T |
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| Q |
211 |
actgatgaaaatcaatactgtaattactgtctttcaagctaactgaaaaggattttgcttgccactgatgaaaagcacttaatgcaggatcaaataggaa |
310 |
Q |
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| T |
18219471 |
actgatgaaaatcaatactgtaattactggctttcaacctaaatgaaatgaatttttcttgccactgatgaaatgcacttaatgtaggatcaaatgggaa |
18219372 |
T |
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| Q |
311 |
tgctgaaaccaacactagtagaagaaccac |
340 |
Q |
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| T |
18219371 |
tgctgaaaccaacactagtagaagaaccac |
18219342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 43011287 - 43011211
Alignment:
| Q |
275 |
ctgatgaaaagcacttaatgcaggatcaaataggaatgctgaaaccaacactagtagaagaaccaccagcgtcattg |
351 |
Q |
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| T |
43011287 |
ctgatgaaaagcacttaacgcaggatcaaatgggaatgctgaaaccaacactagtagaagaaccaccagcgtcattg |
43011211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 43011365 - 43011303
Alignment:
| Q |
168 |
tttactttacattctcatccatctatgccaataaatgttgaagactgatgaaaatcaatactg |
230 |
Q |
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| T |
43011365 |
tttactttatattctcatccatctatgcgaataaatgttgaagactgatgaaaatcaatactg |
43011303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 43011198 - 43011156
Alignment:
| Q |
346 |
tcattgacagaaaacattggacatgagacaagggaggaagaga |
388 |
Q |
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| T |
43011198 |
tcattgacagaaaacattggacatgagacaagggaggaagaga |
43011156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 43011496 - 43011444
Alignment:
| Q |
11 |
cataggattgagtgttttcattgcaaaataatgatgttatgattgctatgaac |
63 |
Q |
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| T |
43011496 |
cataggattgagcgttttcattgcaaaataatgattttatgattggtatgaac |
43011444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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