View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3917_low_9 (Length: 300)
Name: NF3917_low_9
Description: NF3917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3917_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 3 - 291
Target Start/End: Original strand, 12997703 - 12997990
Alignment:
| Q |
3 |
cagcagagacacgcataatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgc |
102 |
Q |
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| T |
12997703 |
cagcagagacacgcataatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgt |
12997801 |
T |
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| Q |
103 |
ttcctaataacaaataaaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagt |
202 |
Q |
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| T |
12997802 |
ttcctaataacaaataaaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagt |
12997901 |
T |
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| Q |
203 |
aaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
291 |
Q |
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| T |
12997902 |
aaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
12997990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 3 - 291
Target Start/End: Original strand, 13072343 - 13072630
Alignment:
| Q |
3 |
cagcagagacacgcataatccaaaaaatatatgcaatcatatgtgtcggacgccaaacataatctaatagagacacgcataatccaaaaagtatacgtgc |
102 |
Q |
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| T |
13072343 |
cagcagagacacgcataatccaaaaagtatatgtaatgatatgtgtcggacgccaaacata-tctaacagagacacgcataatccaaaaagtatatgtgt |
13072441 |
T |
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| Q |
103 |
ttcctaataacaaataaaattgaaagatagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagt |
202 |
Q |
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| T |
13072442 |
ttcctaataacaaataaaattgaaagacagagatagaagcatcgaatcaaatattgtccaaagtatgtacttactttccccaccaaagttcattttcagt |
13072541 |
T |
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| Q |
203 |
aaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
291 |
Q |
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| T |
13072542 |
aaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgccattgctccattggaagtgatga |
13072630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 28139031 - 28139138
Alignment:
| Q |
170 |
tacttactttccccaccaaagttcattttcagtaaccttatccttaaccacacgcttgtctctaggagaacgacctgtcttggcaccagaaagtgttgcc |
269 |
Q |
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| T |
28139031 |
tacttactttccccaccaaagctcattctcagtgagatcatccttgacgacacgcttatctcttggacaccgtccggtcttggcccccgaaagtgtagcc |
28139130 |
T |
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| Q |
270 |
attgctcc |
277 |
Q |
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| T |
28139131 |
aatgctcc |
28139138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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