View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3918_high_104 (Length: 324)
Name: NF3918_high_104
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3918_high_104 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 19804998 - 19805176
Alignment:
| Q |
1 |
ataaataagaacagggatgcagaaattgcaaacagaaactttcagggaccaaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19804998 |
ataaataagaacagggatgcagaaattgcaaacagaaactttcagggaccgaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaag |
19805097 |
T |
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| Q |
101 |
tggttcgaaaatctcatacaattttgcaggaacgattattgtttgaatcggaattgaattacagtcagaaatcacaact |
179 |
Q |
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| T |
19805098 |
tggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgagaaatcacaact |
19805176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 27775472 - 27775650
Alignment:
| Q |
1 |
ataaataagaacagggatgcagaaattgcaaacagaaactttcagggaccaaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775472 |
ataaataagaacagggatgcagaaattgcaaacagaaactttcagggaccgaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaag |
27775571 |
T |
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| Q |
101 |
tggttcgaaaatctcatacaattttgcaggaacgattattgtttgaatcggaattgaattacagtcagaaatcacaact |
179 |
Q |
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| T |
27775572 |
tggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgagaaatcacaact |
27775650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 40578062 - 40577886
Alignment:
| Q |
1 |
ataaataagaacagggatgcagaaattgcaaacagaaactttcagggaccaaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaag |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40578062 |
ataaataagaacagagatgcagaaattgcaaacagaaactttcagggaccaaattgcacgaaaatgtaaagatgaatctgaaatttatttcttcacaaag |
40577963 |
T |
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| Q |
101 |
tggttcgaaaatctcatacaattttgcaggaacgattattgtttgaatcggaattgaattacagtcagaaatcacaact |
179 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
40577962 |
tggttcgaaaatctcatacaattctgcaggaacgattattgtttgaatcggaattgaattac--taagaaatcacaact |
40577886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 40577820 - 40577758
Alignment:
| Q |
244 |
cgtttctgttacgatttcatggtggcacgatttttccaatgacctgcttcaggaatttcttca |
306 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40577820 |
cgtttctgttacgattccattgtggcacgatttttccaatgacttgcttcaggaatttcttca |
40577758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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