View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_high_106 (Length: 317)

Name: NF3918_high_106
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_high_106
NF3918_high_106
[»] chr3 (14 HSPs)
chr3 (5-302)||(39907229-39907542)
chr3 (5-70)||(13934531-13934598)
chr3 (5-69)||(24095335-24095402)
chr3 (21-70)||(35201468-35201517)
chr3 (5-68)||(6999245-6999311)
chr3 (5-68)||(36412198-36412264)
chr3 (7-67)||(49417652-49417714)
chr3 (5-68)||(51465844-51465910)
chr3 (69-98)||(21195775-21195804)
chr3 (5-70)||(36121896-36121964)
chr3 (41-69)||(9158802-9158830)
chr3 (5-70)||(21195819-21195886)
chr3 (41-69)||(26672512-26672540)
chr3 (41-69)||(33795654-33795682)
[»] chr8 (11 HSPs)
chr8 (24-70)||(18651457-18651503)
chr8 (1-70)||(1871543-1871614)
chr8 (5-70)||(36531670-36531737)
chr8 (21-70)||(7478873-7478922)
chr8 (5-70)||(7586091-7586158)
chr8 (5-69)||(30439435-30439502)
chr8 (5-68)||(16872086-16872152)
chr8 (23-68)||(36885418-36885464)
chr8 (5-70)||(36110213-36110281)
chr8 (40-68)||(4658184-4658212)
chr8 (36-72)||(6968159-6968195)
[»] chr2 (12 HSPs)
chr2 (21-70)||(5200154-5200203)
chr2 (7-70)||(4753238-4753303)
chr2 (21-67)||(35705587-35705633)
chr2 (5-69)||(5054683-5054750)
chr2 (5-69)||(6895969-6896036)
chr2 (5-65)||(15269936-15269999)
chr2 (5-70)||(28679392-28679459)
chr2 (5-69)||(40936993-40937060)
chr2 (26-68)||(23352837-23352880)
chr2 (23-68)||(22525926-22525972)
chr2 (40-69)||(29712091-29712120)
chr2 (1-65)||(2221064-2221131)
[»] chr1 (13 HSPs)
chr1 (5-94)||(21486221-21486313)
chr1 (1-86)||(32319218-32319309)
chr1 (5-70)||(36673660-36673727)
chr1 (5-70)||(47214283-47214350)
chr1 (7-70)||(51286296-51286361)
chr1 (26-68)||(6143781-6143824)
chr1 (23-69)||(33358087-33358134)
chr1 (5-68)||(47721484-47721550)
chr1 (5-68)||(47728476-47728542)
chr1 (23-68)||(21093288-21093334)
chr1 (5-70)||(902713-902781)
chr1 (5-69)||(10889975-10890042)
chr1 (38-70)||(36494562-36494594)
[»] chr7 (12 HSPs)
chr7 (5-70)||(26041248-26041315)
chr7 (5-96)||(39332060-39332158)
chr7 (36-70)||(39823917-39823951)
chr7 (20-70)||(46148084-46148134)
chr7 (26-67)||(23048331-23048372)
chr7 (5-69)||(7817711-7817778)
chr7 (1-70)||(44495026-44495097)
chr7 (5-70)||(47078180-47078247)
chr7 (5-65)||(12645843-12645906)
chr7 (5-69)||(41458671-41458738)
chr7 (41-69)||(42926253-42926281)
chr7 (26-69)||(43482621-43482665)
[»] chr4 (18 HSPs)
chr4 (1-70)||(41082389-41082460)
chr4 (21-67)||(41389804-41389850)
chr4 (5-70)||(31076129-31076196)
chr4 (1-70)||(54669512-54669583)
chr4 (23-68)||(32696276-32696322)
chr4 (5-70)||(17475952-17476019)
chr4 (26-69)||(56271458-56271502)
chr4 (5-68)||(46405904-46405970)
chr4 (35-70)||(55601636-55601671)
chr4 (5-67)||(12138928-12138993)
chr4 (23-68)||(13086117-13086163)
chr4 (23-68)||(22819744-22819790)
chr4 (44-98)||(6494528-6494586)
chr4 (5-70)||(9118792-9118860)
chr4 (40-69)||(13104311-13104340)
chr4 (21-70)||(37066081-37066130)
chr4 (5-70)||(51194344-51194412)
chr4 (25-68)||(43769808-43769852)
[»] chr5 (10 HSPs)
chr5 (21-70)||(2224885-2224934)
chr5 (21-70)||(37700553-37700602)
chr5 (5-69)||(15952974-15953041)
chr5 (5-94)||(18842221-18842317)
chr5 (5-70)||(42267421-42267488)
chr5 (5-68)||(8675363-8675429)
chr5 (5-68)||(38704127-38704193)
chr5 (40-69)||(9581692-9581721)
chr5 (5-69)||(10649510-10649577)
chr5 (5-69)||(41175635-41175702)
[»] chr6 (6 HSPs)
chr6 (23-68)||(6531110-6531156)
chr6 (36-70)||(13658940-13658974)
chr6 (5-68)||(1369435-1369501)
chr6 (5-68)||(13143312-13143378)
chr6 (37-70)||(22341103-22341136)
chr6 (26-69)||(14699593-14699637)
[»] scaffold0471 (1 HSPs)
scaffold0471 (5-70)||(82-150)
[»] scaffold0014 (1 HSPs)
scaffold0014 (5-71)||(122906-122974)
[»] scaffold0532 (1 HSPs)
scaffold0532 (5-69)||(11039-11106)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 302
Target Start/End: Complemental strand, 39907542 - 39907229
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttcttt-gtaaattatggttgtcaatt-gattgttcaaataatactcctctttaat 100  Q
    ||||||||||||||||  |||||||| ||||  || |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39907542 actttatttctctattgctatgatttccgtgtcaacactacttttttttttgtaaattatggttgtcaatttgattgttcaaataatactcctctttaat 39907443  T
Q  101 attttttcatctactt------------aggtttatgtgcttaccattttgaagacacaaaatataggttgtcaacaacaaataggatatcaaaatacca 188  Q
    ||||||||||||||||            |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39907442 attttttcatctactttttcatctacttaggtttacatgcttaccattttgaagacacaaaatataggttgtcaacaacaaataggatgtcaaaatacca 39907343  T
Q  189 gtcatctttcaacaatgatattttggaaactgaaattttctttcactcattcaacaccttattttcattatatatttttaaaactattgaggtgtattaa 288  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  39907342 gtcctctttcaacaatgatattttggaaactgaaattttctttcactcattcaacaccttattttcattatatatttttacaactattaaggtgtattaa 39907243  T
Q  289 gaaacatcttacat 302  Q
    ||||||| ||||||    
T  39907242 gaaacattttacat 39907229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 13934598 - 13934531
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||||||||||||  |||| ||| ||||| |||| ||||||||||||||||||||||||| ||||    
T  13934598 actttatttctctattgttatggtttccgtgccaataatactttttctttgtaaattatggttatcaa 13934531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 24095402 - 24095335
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatac-tactttttctttgtaaattatggttgtca 69  Q
    ||||||||||||||||  | || ||||||||| ||||| |||||||||||||||||||||||||||||    
T  24095402 actttatttctctattgctttggttttcgtgcaaatacctactttttctttgtaaattatggttgtca 24095335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 35201517 - 35201468
Alignment:
Q  21 tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    |||| ||||||||  ||||||||||||||||||||||||||| |||||||    
T  35201517 tatggttttcgtgtcaatactactttttctttgtaaattatgattgtcaa 35201468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 6999245 - 6999311
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatac-tactttttctttgtaaattatggttgtc 68  Q
    ||||||||||||||||  | |||||||||||| ||||| || |||||| ||||||||||||||||||    
T  6999245 actttatttctctattgctttgattttcgtgcaaatacatattttttcattgtaaattatggttgtc 6999311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 36412198 - 36412264
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatac-tactttttctttgtaaattatggttgtc 68  Q
    ||||||||||||||||  | |||||||||||| ||||| || | |||||||||||||||||||||||    
T  36412198 actttatttctctattgctttgattttcgtgcaaatacatattctttctttgtaaattatggttgtc 36412264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 49417652 - 49417714
Alignment:
Q  7 tttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgt 67  Q
    ||||| ||||||||  |||| ||| ||||| |||||||||||||||||||||||| |||||||    
T  49417652 tttatctctctattgctatggtttccgtgccaatactactttttctttgtaaattttggttgt 49417714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 51465910 - 51465844
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatacta-ctttttctttgtaaattatggttgtc 68  Q
    ||||||| ||||||||  | |||||||||||| ||||| | ||||||||||||||||||||||||||    
T  51465910 actttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 51465844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 98
Target Start/End: Complemental strand, 21195804 - 21195775
Alignment:
Q  69 aattgattgttcaaataatactcctcttta 98  Q
    ||||||||||||||||||||||||||||||    
T  21195804 aattgattgttcaaataatactcctcttta 21195775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 36121896 - 36121964
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactac-tttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  ||||||||| |||| ||||| || |||||||||||||| ||||||||||||    
T  36121896 actttatctctctattgctatgatttttgtgccaataccacatttttctttgtaaaatatggttgtcaa 36121964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 9158830 - 9158802
Alignment:
Q  41 tactttttctttgtaaattatggttgtca 69  Q
    |||||||||||||||||||||||||||||    
T  9158830 tactttttctttgtaaattatggttgtca 9158802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 21195886 - 21195819
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||||||| ||||  |||||||||||| |||| |||||||| ||||||||    
T  21195886 actttatctctctattgctatgatttccgtgtcaatactacttttcctttataaattatagttgtcaa 21195819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 26672512 - 26672540
Alignment:
Q  41 tactttttctttgtaaattatggttgtca 69  Q
    |||||||||||||||||||||||||||||    
T  26672512 tactttttctttgtaaattatggttgtca 26672540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 33795682 - 33795654
Alignment:
Q  41 tactttttctttgtaaattatggttgtca 69  Q
    |||||||||||||||||||||||||||||    
T  33795682 tactttttctttgtaaattatggttgtca 33795654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 18651457 - 18651503
Alignment:
Q  24 gattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  18651457 gattttcgtgccaatactactttttctttgtaaattatggttgtcaa 18651503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1871614 - 1871543
Alignment:
Q  1 tttcactttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||||||| ||||||||  |||| ||| ||||| ||||| |||||||||||||||||||||||||||||    
T  1871614 tttcactttatctctctattgttatggtttccgtgcgaatacaactttttctttgtaaattatggttgtcaa 1871543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 36531670 - 36531737
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||||||| ||||| |||||||||||||||||||||||| || |||||||    
T  36531670 actttatctctctattgttatgatttccgtgccaatactactttttctttgtaaattttgattgtcaa 36531737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 7478873 - 7478922
Alignment:
Q  21 tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    |||| ||| ||||| ||||||||||||||||||||||||||| |||||||    
T  7478873 tatggtttccgtgccaatactactttttctttgtaaattatgattgtcaa 7478922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 7586158 - 7586091
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||| ||| ||||| ||| |||||||||||||||||||||| ||||||||    
T  7586158 actttatctctctattgatatgttttccgtgccaatgctactttttctttgtaaattatagttgtcaa 7586091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 30439502 - 30439435
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatact-actttttctttgtaaattatggttgtca 69  Q
    ||||||| ||||||||  | |||||||||||| |||||| | ||||||||||||||||||||||||||    
T  30439502 actttatctctctattgctttgattttcgtgcaaatactcattttttctttgtaaattatggttgtca 30439435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 16872152 - 16872086
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaata-ctactttttctttgtaaattatggttgtc 68  Q
    ||||||| ||||||||  | |||||||||||| |||| | |||||||||||||||||||||||||||    
T  16872152 actttatctctctattgctttgattttcgtgcaaatatcaactttttctttgtaaattatggttgtc 16872086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 36885464 - 36885418
Alignment:
Q  23 tgattttcgtgctaatac-tactttttctttgtaaattatggttgtc 68  Q
    |||||||||||  ||||| ||||||||||||||||||||||||||||    
T  36885464 tgattttcgtgtcaatacctactttttctttgtaaattatggttgtc 36885418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 36110213 - 36110281
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttt-tctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||| ||||||||| ||||| |||||| |||||||||| ||||||||||||    
T  36110213 actttatctctctattgttatggttttcgtgccaataccacttttttctttgtaaaatatggttgtcaa 36110281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 4658212 - 4658184
Alignment:
Q  40 ctactttttctttgtaaattatggttgtc 68  Q
    |||||||||||||||||||||||||||||    
T  4658212 ctactttttctttgtaaattatggttgtc 4658184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 6968195 - 6968159
Alignment:
Q  36 aatactactttttctttgtaaattatggttgtcaatt 72  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  6968195 aatactactttttttttgtaaattatggttgtaaatt 6968159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 5200203 - 5200154
Alignment:
Q  21 tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  5200203 tatgatttccgtgccaatactactttttctttgtaaattatggttgtcaa 5200154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 4753238 - 4753303
Alignment:
Q  7 tttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||| ||||||||  |||||||| ||||  ||||||||||||||||| |||||||||||||||||    
T  4753238 tttatctctctattgctatgatttccgtgtcaatactactttttctttataaattatggttgtcaa 4753303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 35705587 - 35705633
Alignment:
Q  21 tatgattttcgtgctaatactactttttctttgtaaattatggttgt 67  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||    
T  35705587 tatggttttcgtgtcaatactactttttctttgtaaattatggttgt 35705633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 5054683 - 5054750
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatac-tactttttctttgtaaattatggttgtca 69  Q
    ||||||| ||||||||  | |||||||||||| ||||| ||||||||||||||||||||| |||||||    
T  5054683 actttatctctctattgctttgattttcgtgcaaatacctactttttctttgtaaattattgttgtca 5054750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 6895969 - 6896036
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatact-actttttctttgtaaattatggttgtca 69  Q
    ||||||||||||||||  | ||||||  |||| |||||| ||||||||||||||||||||||||||||    
T  6895969 actttatttctctattgttttgatttctgtgcaaatacttactttttctttgtaaattatggttgtca 6896036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 15269936 - 15269999
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatac-tactttttctttgtaaattatggtt 65  Q
    ||||||| ||||||||  | |||||||||||| ||||| |||||||||||||||||||||||||    
T  15269936 actttatctctctattgctttgattttcgtgcaaatacctactttttctttgtaaattatggtt 15269999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 28679392 - 28679459
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||||||| | ||  ||||||||||||||||| |||||||||||||||||    
T  28679392 actttatctctctattgctatgatttccatgtcaatactactttttctttataaattatggttgtcaa 28679459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 40937060 - 40936993
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatact-actttttctttgtaaattatggttgtca 69  Q
    ||||||| ||||||||  | |||||||||||| |||||  ||||||||||||||||||||||||||||    
T  40937060 actttatctctctattgctttgattttcgtgcaaatacccactttttctttgtaaattatggttgtca 40936993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 23352880 - 23352837
Alignment:
Q  26 ttttcgtgctaatac-tactttttctttgtaaattatggttgtc 68  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||    
T  23352880 ttttcgtgcaaatacatactttttctttgtaaattatggttgtc 23352837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 22525972 - 22525926
Alignment:
Q  23 tgattttcgtgctaatac-tactttttctttgtaaattatggttgtc 68  Q
    |||||||||||| ||| | ||||||||||||||||||||||||||||    
T  22525972 tgattttcgtgcaaatgcctactttttctttgtaaattatggttgtc 22525926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 29712091 - 29712120
Alignment:
Q  40 ctactttttctttgtaaattatggttgtca 69  Q
    ||||||||||||||||||||||||||||||    
T  29712091 ctactttttctttgtaaattatggttgtca 29712120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2221064 - 2221131
Alignment:
Q  1 tttcactttatttctctatt--tatgattttcgtgctaatac-tactttttctttgtaaattatggtt 65  Q
    ||||||||||| ||||||||  | |||||| ||||| ||||| |||||||||||| ||||||||||||    
T  2221064 tttcactttatctctctattgctttgatttccgtgcaaatacctactttttctttataaattatggtt 2221131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 21486313 - 21486221
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtc-aattgattgttcaaataatactcctc 94  Q
    ||||||| ||||||||  |||| ||| ||||| ||||||||||||||||| ||||| ||||||||| ||||| |||||||||||| |||||||    
T  21486313 actttatctctctattgctatggtttccgtgccaatactactttttctttataaatcatggttgtcaaattggttgttcaaataacactcctc 21486221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 32319309 - 32319218
Alignment:
Q  1 tttcactttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtc----aattgattgttcaaataa 86  Q
    |||||||| || ||||||||  |||| ||| ||||  |||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  32319309 tttcacttcatctctctattactatggtttccgtgtcaatactactttttctttgtaaattatggttgtcatcaaattgattgttcaaataa 32319218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 36673727 - 36673660
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||| ||| ||||  |||||||||||||||||||||||||||||||||||    
T  36673727 actttatctctctattgctatggtttccgtgtcaatactactttttctttgtaaattatggttgtcaa 36673660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 47214283 - 47214350
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||| ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  47214283 actttatctctctattgttatggtttccgtgccaatactactttttctttgtaaattttggttgtcaa 47214350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 51286361 - 51286296
Alignment:
Q  7 tttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||| ||||||||  |||| ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  51286361 tttatctctctattgctatggtttccgtgccaatactactttttctttgtaaattttggttgtcaa 51286296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 6143781 - 6143824
Alignment:
Q  26 ttttcgtgctaatac-tactttttctttgtaaattatggttgtc 68  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||    
T  6143781 ttttcgtgcaaatacctactttttctttgtaaattatggttgtc 6143824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 33358134 - 33358087
Alignment:
Q  23 tgattttcgtgctaatact-actttttctttgtaaattatggttgtca 69  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||    
T  33358134 tgattttcgtgcaaatacccactttttctttgtaaattatggttgtca 33358087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 47721484 - 47721550
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatact-actttttctttgtaaattatggttgtc 68  Q
    ||||||| ||||||||  | |||||||||||  |||||| |||||||||||||||||||||||||||    
T  47721484 actttatctctctattgctttgattttcgtgtcaatacttactttttctttgtaaattatggttgtc 47721550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 47728476 - 47728542
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatact-actttttctttgtaaattatggttgtc 68  Q
    ||||||| ||||||||  | |||||||||||  |||||| |||||||||||||||||||||||||||    
T  47728476 actttatctctctattgctttgattttcgtgtcaatacttactttttctttgtaaattatggttgtc 47728542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 21093334 - 21093288
Alignment:
Q  23 tgattttcgtgctaata-ctactttttctttgtaaattatggttgtc 68  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||||    
T  21093334 tgattttcgtattaatatctactttttctttgtaaattatggttgtc 21093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 902713 - 902781
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactac-tttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||||||| ||||||||||| || |||||||||||||| |||| |||||||    
T  902713 actttatctctctattgctatgatttccgtgctaataccacttttttctttgtaaaatatgattgtcaa 902781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 10890042 - 10889975
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatacta-ctttttctttgtaaattatggttgtca 69  Q
    ||||||| ||||||||  | ||||||||||||  |||| | |||||||||||||||||||||||||||    
T  10890042 actttatctctctattgctttgattttcgtgcacataccaactttttctttgtaaattatggttgtca 10889975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 36494562 - 36494594
Alignment:
Q  38 tactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||||||||||||||||||||| |||||||    
T  36494562 tactactttttctttgtaaattatgattgtcaa 36494594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 26041315 - 26041248
Alignment:
Q  5 actttatttctctattt--atgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| |||||||||  ||||||| ||||  |||||||||||||||||||||||||||||||||||    
T  26041315 actttatctctctatttctatgatttccgtgtcaatactactttttctttgtaaattatggttgtcaa 26041248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 39332060 - 39332158
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttt-tctttgtaaattatggttgtc----aattgattgttcaaataatactcctctt 96  Q
    ||||||| ||||||||  |||||||| ||||| ||||| |||||| |||||||||| ||||||||||    ||||| |||||||||||| |||||||||    
T  39332060 actttatctctctattgctatgatttccgtgccaataccacttttttctttgtaaaatatggttgtcatcaaattggttgttcaaataacactcctctt 39332158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 39823917 - 39823951
Alignment:
Q  36 aatactactttttctttgtaaattatggttgtcaa 70  Q
    |||||||||||||||||||||||||||||||||||    
T  39823917 aatactactttttctttgtaaattatggttgtcaa 39823951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 46148084 - 46148134
Alignment:
Q  20 ttatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||||| ||||| ||||||| ||||||||| |||||||||||||||||    
T  46148084 ttatgatttccgtgccaatactattttttctttataaattatggttgtcaa 46148134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 23048372 - 23048331
Alignment:
Q  26 ttttcgtgctaatactactttttctttgtaaattatggttgt 67  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  23048372 ttttcatgcaaatactactttttctttgtaaattatggttgt 23048331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 7817711 - 7817778
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaata-ctactttttctttgtaaattatggttgtca 69  Q
    ||||||| ||||||||  | |||||||||||| |||| | ||||||||||||||||||||||||||||    
T  7817711 actttatctctctattgctttgattttcgtgcaaatatccactttttctttgtaaattatggttgtca 7817778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44495097 - 44495026
Alignment:
Q  1 tttcactttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||||||||||||||||  |||| |||   ||| ||||||| ||||||||| |||||||||||||||||    
T  44495097 tttcactttatttctctattgctatggtttcaatgccaatactaatttttctttataaattatggttgtcaa 44495026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 47078247 - 47078180
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||| ||| ||||| |||| ||||||||||||||||||| ||||||||||    
T  47078247 actttatctctctattgctatggtttccgtgccaatattactttttctttgtaaattttggttgtcaa 47078180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 12645906 - 12645843
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaata-ctactttttctttgtaaattatggtt 65  Q
    ||||||| ||||||||  | |||||||||||| |||| | ||||||||||||||||||||||||    
T  12645906 actttatctctctattgctttgattttcgtgcaaatatcaactttttctttgtaaattatggtt 12645843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 41458671 - 41458738
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatac-tactttttctttgtaaattatggttgtca 69  Q
    ||||||||||| ||||  | ||||||| |||| ||||| |||||||||||| ||||||||||||||||    
T  41458671 actttatttctatattgttttgatttttgtgcaaatacctactttttctttataaattatggttgtca 41458738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 42926253 - 42926281
Alignment:
Q  41 tactttttctttgtaaattatggttgtca 69  Q
    |||||||||||||||||||||||||||||    
T  42926253 tactttttctttgtaaattatggttgtca 42926281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 43482621 - 43482665
Alignment:
Q  26 ttttcgtgctaatac-tactttttctttgtaaattatggttgtca 69  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||    
T  43482621 ttttcgtgcaaatacctactttttctttgaaaattatggttgtca 43482665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41082389 - 41082460
Alignment:
Q  1 tttcactttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||||||| ||||||||  |||||||||||||  ||||||||||||||||||||||||||  |||||||    
T  41082389 tttcactttatctctctattactatgattttcgtgtcaatactactttttctttgtaaattataattgtcaa 41082460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 41389850 - 41389804
Alignment:
Q  21 tatgattttcgtgctaatactactttttctttgtaaattatggttgt 67  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  41389850 tatgatttttgtgccaatactactttttctttgtaaattatggttgt 41389804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 31076129 - 31076196
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||| ||| ||||  |||||||||||||||||||||||||||||||||||    
T  31076129 actttatctctctattactatggtttccgtgtcaatactactttttctttgtaaattatggttgtcaa 31076196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 54669583 - 54669512
Alignment:
Q  1 tttcactttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||||||| ||||||||  || | ||| ||||  |||||||||||||||||||||||||||||||||||    
T  54669583 tttcactttatctctctattgctacggtttccgtgtcaatactactttttctttgtaaattatggttgtcaa 54669512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 32696276 - 32696322
Alignment:
Q  23 tgattttcgtgctaata-ctactttttctttgtaaattatggttgtc 68  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||    
T  32696276 tgattttcgtgccaatatctactttttctttgtaaattatggttgtc 32696322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 17475952 - 17476019
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||| ||| ||||  ||||||||||||||||||||||||||| |||||||    
T  17475952 actttatctctctattgctatggtttccgtgtcaatactactttttctttgtaaattatgattgtcaa 17476019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 56271458 - 56271502
Alignment:
Q  26 ttttcgtgctaatac-tactttttctttgtaaattatggttgtca 69  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||    
T  56271458 ttttcgtgcaaatacctactttttctttgtaaattatggttgtca 56271502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 46405970 - 46405904
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatacta-ctttttctttgtaaattatggttgtc 68  Q
    ||||||| ||||||||  | |||||||||||| ||||| | ||||||||||||||||||||||||||    
T  46405970 actttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 46405904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 55601671 - 55601636
Alignment:
Q  35 taatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||||||||||||||||||||| ||||||||||    
T  55601671 taatactactttttctttgtaaattttggttgtcaa 55601636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 12138928 - 12138993
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatac-tactttttctttgtaaattatggttgt 67  Q
    ||||||| ||||||||  | ||||||| |||| ||||| |||||||||||||||||||||||||||    
T  12138928 actttatctctctattactttgatttttgtgcaaatacctactttttctttgtaaattatggttgt 12138993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 13086117 - 13086163
Alignment:
Q  23 tgattttcgtgctaatacta-ctttttctttgtaaattatggttgtc 68  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||    
T  13086117 tgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 13086163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 22819744 - 22819790
Alignment:
Q  23 tgattttcgtgctaatacta-ctttttctttgtaaattatggttgtc 68  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||    
T  22819744 tgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 22819790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 6494586 - 6494528
Alignment:
Q  44 tttttctttgtaaattatggttgtc----aattgattgttcaaataatactcctcttta 98  Q
    |||||||||||||||||||||||||    ||||| |||||||||||| |||| ||||||    
T  6494586 tttttctttgtaaattatggttgtcaccaaattggttgttcaaataacactcttcttta 6494528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 9118860 - 9118792
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactacttttt-ctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||||||||||||| ||||| | ||||| ||||||||| ||||||||||||    
T  9118860 actttatctctctattgctatgattttcgtgccaataccatttttttctttgtaaaatatggttgtcaa 9118792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 13104340 - 13104311
Alignment:
Q  40 ctactttttctttgtaaattatggttgtca 69  Q
    ||||||||||||||||||||||||||||||    
T  13104340 ctactttttctttgtaaattatggttgtca 13104311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 37066081 - 37066130
Alignment:
Q  21 tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    |||||||| ||||| |||||||||||||||| ||||||| || |||||||    
T  37066081 tatgatttccgtgccaatactactttttcttagtaaattttgattgtcaa 37066130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 51194344 - 51194412
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttt-tctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||| ||||||||| ||||| |||||| |||||||||| ||||||||||||    
T  51194344 actttatctctctattgttatggttttcgtgccaataccacttttttctttgtaaaatatggttgtcaa 51194412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 43769808 - 43769852
Alignment:
Q  25 attttcgtgctaatact-actttttctttgtaaattatggttgtc 68  Q
    |||||||||| |||||  |||||||||||||||||||||||||||    
T  43769808 attttcgtgcaaatacccactttttctttgtaaattatggttgtc 43769852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 2224885 - 2224934
Alignment:
Q  21 tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||||||||    
T  2224885 tatgttttccgtgccaatactactttttctttgtaaattatggttgtcaa 2224934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 37700553 - 37700602
Alignment:
Q  21 tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||||||||    
T  37700553 tatggtttccgtgccaatactactttttctttgtaaattatggttgtcaa 37700602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 15953041 - 15952974
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatact-actttttctttgtaaattatggttgtca 69  Q
    ||||||| ||||||||  | |||||||||||| |||||  ||||||||||||||||||||||||||||    
T  15953041 actttatctctctattgctttgattttcgtgcaaatacccactttttctttgtaaattatggttgtca 15952974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 18842317 - 18842221
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactacttttt-ctttgtaaattatggttgtc----aattgattgttcaaataatactcctc 94  Q
    ||||||| ||||||||  |||| ||||||||| ||||| ||||||| ||||||||| ||||||||||    |||||||| ||||||||| |||||||    
T  18842317 actttatctctctattgctatggttttcgtgccaataccacttttttctttgtaaaatatggttgtcaccaaattgattattcaaataacactcctc 18842221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 42267421 - 42267488
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||||||| ||||  ||||||| ||||||||| |||||||||||||||||    
T  42267421 actttatctctctattgttatgatttccgtgtcaatactattttttctttataaattatggttgtcaa 42267488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 8675429 - 8675363
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatacta-ctttttctttgtaaattatggttgtc 68  Q
    ||||||| ||||||||  | |||||||||||| ||||| | ||||||||||||||||||||||||||    
T  8675429 actttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 8675363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 38704193 - 38704127
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatacta-ctttttctttgtaaattatggttgtc 68  Q
    ||||||||| ||||||  | |||||||||||| ||||| | ||||||||||||||||||||||||||    
T  38704193 actttatttttctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 38704127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 9581692 - 9581721
Alignment:
Q  40 ctactttttctttgtaaattatggttgtca 69  Q
    ||||||||||||||||||||||||||||||    
T  9581692 ctactttttctttgtaaattatggttgtca 9581721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 10649510 - 10649577
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatacta-ctttttctttgtaaattatggttgtca 69  Q
    ||||||| ||||||||  | ||||||||||||  |||| | |||||||||||||||||||||||||||    
T  10649510 actttatctctctattgctttgattttcgtgcacataccaactttttctttgtaaattatggttgtca 10649577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 41175702 - 41175635
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatact-actttttctttgtaaattatggttgtca 69  Q
    ||||||| ||||||||  | |||| ||||||| |||||  ||||||||||||||||||||||||||||    
T  41175702 actttatctctctattgctttgatcttcgtgcaaatacccactttttctttgtaaattatggttgtca 41175635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 6531156 - 6531110
Alignment:
Q  23 tgattttcgtgctaatac-tactttttctttgtaaattatggttgtc 68  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  6531156 tgattttcgtgcaaatacatactttttctttgtaaattatggttgtc 6531110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 13658940 - 13658974
Alignment:
Q  36 aatactactttttctttgtaaattatggttgtcaa 70  Q
    |||||||||||||||||||||||||||||||||||    
T  13658940 aatactactttttctttgtaaattatggttgtcaa 13658974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 1369435 - 1369501
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatacta-ctttttctttgtaaattatggttgtc 68  Q
    ||||||| ||||||||  | |||||||||||| ||||| | ||||||||||||||||||||||||||    
T  1369435 actttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtc 1369501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 13143378 - 13143312
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatacta-ctttttctttgtaaattatggttgtc 68  Q
    ||||||| ||||||||  | |||||||||||| ||||| | ||||||||||||||||||||||||||    
T  13143378 actttatctctctattgctttgattttcgtgcaaatacaaactttttctttgtaaattatggttgtc 13143312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 22341136 - 22341103
Alignment:
Q  37 atactactttttctttgtaaattatggttgtcaa 70  Q
    ||||||||||||||||||||||||| ||||||||    
T  22341136 atactactttttctttgtaaattattgttgtcaa 22341103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 14699637 - 14699593
Alignment:
Q  26 ttttcgtgctaatac-tactttttctttgtaaattatggttgtca 69  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||    
T  14699637 ttttcgtgcaaatacctactttttctttgtaaattattgttgtca 14699593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 82 - 150
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttt-tctttgtaaattatggttgtcaa 70  Q
    ||||||| ||||||||  |||| ||||||||| ||||| |||||| |||||||||| ||||||||||||    
T  82 actttatctctctattgttatggttttcgtgccaataccacttttttctttgtaaaatatggttgtcaa 150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 122906 - 122974
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatactactttttctttgtaaattatggttgtcaat 71  Q
    ||||||||||||||||  |||| ||| ||||| ||||| | ||||| |||||||| |||||||||||||    
T  122906 actttatttctctattgctatggtttccgtgccaataccaatttttttttgtaaaatatggttgtcaat 122974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 11039 - 11106
Alignment:
Q  5 actttatttctctatt--tatgattttcgtgctaatact-actttttctttgtaaattatggttgtca 69  Q
    ||||||| ||||||||  | |||||||||||| |||||  ||||||||||||||||||||| ||||||    
T  11039 actttatctctctattgttttgattttcgtgcaaatacccactttttctttgtaaattatgattgtca 11106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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