View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3918_high_107 (Length: 316)

Name: NF3918_high_107
Description: NF3918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3918_high_107
NF3918_high_107
[»] chr4 (1 HSPs)
chr4 (13-304)||(28001100-28001391)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 28001100 - 28001391
Alignment:
Q  13 tgaacattgaacattggtgctagcgattaaagacaaattgattaataataaactatgcatgcagtgtgtccattgatatttatctgatcctacagacacc 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28001100 tgaacattgaatattggtgctagcgattaaagacaaattgattaataataaactatgcatgcagtgtgtccattgatatttatctgatcctacagacacc 28001199  T
Q  113 aattaaatagtagtcacaaaatggcaaatgcagcaaaatacagagaacattgcaaattgaaattatcatgagcttgggacgcgagaggcccgctcgtgcg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28001200 aattaaatagtagtcacaaaatggcaaatgcagcaaaatacagagaacattgcaaattgaaattatcatgagcttgggacgcgagaggcccgctcgtgcg 28001299  T
Q  213 gacaagccatcacgcttctaagtattgttgctagttgttgttactagtagaatattatgtcatttcagagccttttaccctaacaaataaat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28001300 gacaagccatcacgcttctaagtattgttgctagttgttgttactagtagaatattatgtcatttcagagccttttaccctaacaaataaat 28001391  T

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